Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 789 a.a., penicillin-binding protein 1B (RefSeq) from Shewanella loihica PV-4

 Score =  177 bits (450), Expect = 2e-48
 Identities = 96/263 (36%), Positives = 154/263 (58%), Gaps = 5/263 (1%)

Query: 66  KLIAQFGEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSAS 125
           ++I   GE R   +  +++PK +++A+I  ED  +YEH+G +P  I RAA   +++G   
Sbjct: 185 RMITGDGEDRLF-VATDKIPKAIVDALILVEDRSFYEHHGVNPFAIIRAAMVNISAGRTV 243

Query: 126 QGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRS-- 183
           QG ST+TQQLA+NFFLS+E+ ++RK++E  +AI I+    K EILE YLN++Y+G     
Sbjct: 244 QGGSTLTQQLAKNFFLSSERSIIRKLREALMAIIIDFRYDKDEILEAYLNEVYMGQDKSR 303

Query: 184 --YGVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLD 241
             +G+G A+Q YFG+ + +LTL + A +    K PS  NP    ERA  RR++VL+ +++
Sbjct: 304 AVHGMGLASQFYFGRPIAELTLPQQAFLVAAIKGPSYYNPWRFPERAQERRDLVLRLLME 363

Query: 242 EKYITKAEYDAARAEPVLPKYHGAEIELNAPYVAEIARAWMVERYGEEAAYTSGMNVYTT 301
              +  A+Y AA   P+  +     +    P    + R  +  R+G+     SG+ VYTT
Sbjct: 364 SGQLPVAQYKAAVESPLGVRKASKPVHQKLPAFFAVVRGELSRRFGDSLLQQSGIKVYTT 423

Query: 302 VDSKLQRAANQAAINNLLAYDER 324
           +D   Q AA QA  + +   ++R
Sbjct: 424 LDPLAQEAAEQAVRSTMKNLEQR 446



 Score =  107 bits (267), Expect = 3e-27
 Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 37/288 (12%)

Query: 446 VAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAALNKG--LTLATLIN 503
           V  +  +  + A+VG     +  FNRA +  R +GS IKPF+Y+ AL  G   TLAT + 
Sbjct: 455 VVTDKYSAGIAAMVGDKVPSYQGFNRAVEIRRPIGSLIKPFVYATALTHGDKYTLATPLK 514

Query: 504 DAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYLTR 563
           D PI     SQG  W P+N    ++G   L     +S NV  V +   +G D     L +
Sbjct: 515 DEPIT-LTNSQGKTWSPQNVNKQFSGEVPLMTAFKKSMNVPTVNLGMAIGTDAVATTLAK 573

Query: 564 FGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFSAE 623
            G+  + +P   ++ LGA + +P+ +AQ +   A+NG + +   ++ V      ++   +
Sbjct: 574 SGWD-ETIPEYPSMLLGAVNGSPLMVAQVYQTLADNGRYRQLNAVTHV------LDADNQ 626

Query: 624 PKVVCHRECSSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGWNG 683
           P                   A+   A + IS  + FL +  +   +  G           
Sbjct: 627 P-----------------LSASQRGADQAISVASDFLVQHAMTQVVQSGTATK------- 662

Query: 684 TGWRAQALKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHSR 731
                QA     + GKTGT+NDS+D+W+ G+    V   WVG DD+ +
Sbjct: 663 ---LGQAFPGVTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGLDDNGK 707