Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., 1A family penicillin-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  858 bits (2217), Expect = 0.0
 Identities = 446/865 (51%), Positives = 585/865 (67%), Gaps = 45/865 (5%)

Query: 11  VKFIKRLLVFSLICIILGVTTIFGFYFYVKSDLPDVATLRDVQLQTPMQVFSQDGKLIAQ 70
           +K+ KR+ +      +LG+  I   YFYV  DLPDV TL+ V+LQTP++++S DGKLI+Q
Sbjct: 1   MKWFKRITIALFSLALLGIGAIAAAYFYVLPDLPDVTTLKTVKLQTPLRIYSADGKLISQ 60

Query: 71  FGEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSASQGAST 130
           FGEKRRIP++ E++P++LI AV+ TED+R++EH G DPIGI RAA  +  +G  SQGAST
Sbjct: 61  FGEKRRIPVEYEQVPQQLINAVLDTEDARFFEHKGIDPIGIIRAAVILATTGKKSQGAST 120

Query: 131 ITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRSYGVGAAA 190
           ITQQ+AR FFLS EK  +RK+KEIF+A+ IEQ LSK+EIL LYLN+ +LG R+YGVGAAA
Sbjct: 121 ITQQVARGFFLSREKTYIRKIKEIFLALKIEQALSKKEILTLYLNRSFLGNRAYGVGAAA 180

Query: 191 QAYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLDEKYITKAEY 250
           Q Y+GKE+++LTL E+A+IAGLP+APS  NPI +  RA NRRN VL RML+++ IT  EY
Sbjct: 181 QVYYGKELEELTLPEMAMIAGLPQAPSAANPIRNPARAMNRRNWVLSRMLEKENITPDEY 240

Query: 251 DAARAEPVLPKYHGAEIELNAPYVAEIARAWMVERYGEEAAYTSGMNVYTTVDSKLQRAA 310
             A   P+  KYHGAE+EL APY++E+AR ++VE+ GEE AYT G NVYTTVDS+LQ  A
Sbjct: 241 QEAIRAPITAKYHGAEVELYAPYISEMARDYLVEKLGEEEAYTGGYNVYTTVDSRLQMLA 300

Query: 311 NQAAINNLLAYDERHGYRGAEKELWQVNQPA-WSSTQLSEYLSNEPTYGDMFPAAVLSVE 369
            +A  NN+ AYDERHGYRGA K LW     A    TQ+   L     +  + PAAVL V 
Sbjct: 301 QEALRNNVYAYDERHGYRGATKVLWDAEGTAKLDETQIVTQLKQTQGFQGLEPAAVLEVA 360

Query: 370 EKSAQVWVKSYGVQTIAWEDMNWARRFINDDRQGPLPKSANEFLAAGQQIWVRPRTQDGA 429
           E+S +V        T+ WE + WAR+FI++ RQG  PK+A E L AG+Q+W+R    +G 
Sbjct: 361 EQSVKVINAKGETLTLEWEGLKWARKFISNKRQGKAPKTAGEILKAGEQVWIR---NNGN 417

Query: 430 ITAWKLTQVPNANTAFVAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYS 489
           I  W+L+Q+P   +A V+++P++GA+  LVGG++F  +++NR TQ+ RQ+GS+IKPFIY+
Sbjct: 418 I--WQLSQIPEVASAIVSLDPKDGAIRTLVGGYSFHTSQYNRVTQAKRQLGSNIKPFIYT 475

Query: 490 AALNKGLTLATLINDAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVL 549
            AL KG TLATLIN+APIN  D  QGTAWRPKNSP  YTGPTRLR+GLAQS NVM+VR +
Sbjct: 476 GALEKGYTLATLINNAPINNADIRQGTAWRPKNSPDKYTGPTRLRVGLAQSINVMSVRAM 535

Query: 550 REVGLDETREYLTRFGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYIS 609
           R  GL+   + L +FGF  D LP++E++ALG+ S+TP+Q+   FSVFAN GY VEP++I 
Sbjct: 536 RYTGLESAIDTLVKFGFDRDDLPQNESLALGSPSVTPLQVVTAFSVFANGGYRVEPYFID 595

Query: 610 RVENPFGNIEFSAEPKVVC-------------------------HRECSSELD--EFAEQ 642
            ++N +      A P + C                         H   + E++  E A Q
Sbjct: 596 HIDNAYEQTVEEASPTLACKPELIQPQTLPTDDPFAAMAQELPKHEVANQEVEGLEVASQ 655

Query: 643 DA---------ASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGWNGTGWR-AQALK 692
           +A          + +AP++IS+Q AFL  E L S IWGGG+WS  TGWNGT WR A+ + 
Sbjct: 656 EANAEDPSCPSTARHAPQIISKQTAFLITEALKSVIWGGGDWSKGTGWNGTAWRAARVVN 715

Query: 693 RRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHSRNLGKTAPNRN-IEDDVSGAES 751
           R DI GKTGTTN+SKD W++G+ P +    WVGFDDHS  LG+TA N N  +D +SGAE+
Sbjct: 716 RHDIAGKTGTTNESKDTWFSGFTPTLATTVWVGFDDHSIELGRTAWNTNGAKDQISGAEA 775

Query: 752 GGKTALPAWVEFMSLALQDVPVQQKAVPNNIARVRIDRDTGLLTNKLDSSSMFEYFEAGT 811
           G KTA P W EFM  ALQ  P      P  I   RID  TG L+ K D ++ FEYF  GT
Sbjct: 776 GAKTAGPGWNEFMKNALQGTPELPSPPPEGIVSARIDLATGKLSRKTDYTTKFEYFIQGT 835

Query: 812 EPTEYVSE-HVNESIYSTSSGEELF 835
           EP E+ +E    E I+   S E+LF
Sbjct: 836 EPKEFATEAQTQEDIFIDDSVEDLF 860