Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 768 a.a., penicillin-binding protein 1B (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  177 bits (448), Expect = 3e-48
 Identities = 95/262 (36%), Positives = 151/262 (57%), Gaps = 5/262 (1%)

Query: 66  KLIAQFGEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSAS 125
           ++I   GE R   +  EEMPK +++A++  ED  +YEH+G +P  I RAAF  + +G   
Sbjct: 164 RMITGDGEDRLF-VSTEEMPKPIVQALLLVEDRSFYEHHGVNPFAILRAAFVNITAGRTV 222

Query: 126 QGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRS-- 183
           QG ST+TQQLA+NFFLS+E+ ++RKV+E  +A+ I+   SK EILE YLN++Y+G     
Sbjct: 223 QGGSTLTQQLAKNFFLSSERSLLRKVREALMAVIIDFRYSKDEILEAYLNEVYMGQDKSR 282

Query: 184 --YGVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLD 241
             +G+G A+Q YFG+ + +LT  + A +    K PS  NP    ER+  RR++VL+ +++
Sbjct: 283 AVHGMGLASQFYFGRPIGELTTAQQAFLVAAIKGPSYYNPWRYPERSLERRDLVLRLLME 342

Query: 242 EKYITKAEYDAARAEPVLPKYHGAEIELNAPYVAEIARAWMVERYGEEAAYTSGMNVYTT 301
              +  A+Y  A   P+  +     +    P    + +  + +RYG+     SG+ +YTT
Sbjct: 343 SGELNTAQYKVAVESPLGLRNANKPVHQKLPSFYALVKQEVNQRYGDALLKQSGVKIYTT 402

Query: 302 VDSKLQRAANQAAINNLLAYDE 323
           +D   Q AA  A      + D+
Sbjct: 403 LDPMAQEAAEIAVTQTFKSLDK 424



 Score =  107 bits (266), Expect = 3e-27
 Identities = 95/350 (27%), Positives = 156/350 (44%), Gaps = 57/350 (16%)

Query: 446 VAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAAL--NKGLTLATLIN 503
           V  +   G + A+VG      + +NRA +  R +GS IKPF+Y+ AL  N   TLA+ + 
Sbjct: 434 VVTDKYTGGIAAMVGDKTPGFDGYNRAVEIRRPIGSLIKPFVYATALAPNSQFTLASPLK 493

Query: 504 DAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYLTR 563
           D PI   +E QG  W P+N   T++G   L   L +S NV  V +   VG+D     L +
Sbjct: 494 DQPITLKNE-QGKTWSPQNFDKTFSGQVSLLTALKKSMNVPTVNLGIAVGVDAVVTTLAK 552

Query: 564 FGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFSAE 623
            G++ + L    ++ LGA + +P+ +AQ +   A++G + +   ++ V      ++   +
Sbjct: 553 SGWE-EPLNEYPSMLLGAVNGSPLMVAQVYQTLADSGAYRKLTTVTAV------LDSDNQ 605

Query: 624 PKVVCHRECSSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGWNG 683
           P  V            A++ A +P           FL +  +   +  G        + G
Sbjct: 606 PLPVTRS---------AKEQAITP--------DTDFLVQYAMQQVVRSGTATRLGNAFPG 648

Query: 684 TGWRAQALKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHSRNLGKTAPNRNIE 743
                       + GKTGT+NDS+D+W+ G+    V   WVG DD+    GKT+      
Sbjct: 649 VA----------LAGKTGTSNDSRDSWFAGFDERNVAAIWVGRDDN----GKTS------ 688

Query: 744 DDVSGAESGGKTALPAWV-EFMSLALQDVPVQQKAVPNNIARVRIDRDTG 792
                  SG      A++ E   + L+ +P      P+ + +   DRDTG
Sbjct: 689 ---LYGSSGAMAVYQAFLKERPPIGLRSIP------PSGVIKGYFDRDTG 729