Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 807 a.a., penicillin-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  411 bits (1057), Expect = e-119
 Identities = 275/853 (32%), Positives = 423/853 (49%), Gaps = 83/853 (9%)

Query: 12  KFIKRLLVFSLICIILGVTTIFGFYFYVKSDLPDVATLRDVQLQTPMQVFSQDGKLIAQF 71
           K +  L +  +  + +G +       +   DLP    + D +      V ++DG ++AQF
Sbjct: 3   KTLLTLCILVVAGVAIGASLAVIMVMWASRDLPSFTRIADYRPPQVTVVQARDGSVMAQF 62

Query: 72  GEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSASQGASTI 131
             ++R  + L +MP  L  A +A ED  +Y H G DP+ I RA    L +GS  QG STI
Sbjct: 63  FREKRFLVALGDMPARLPMAFLAAEDDSFYRHDGIDPVAIGRAFIKNLQAGSIKQGGSTI 122

Query: 132 TQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRSYGVGAAAQ 191
           TQQ+ +   LS+E+   RK+KE  +A  +E+ L+K EIL +YLN+IYLG  +YGV +AA+
Sbjct: 123 TQQIVKRLLLSSERSYERKIKEAILAYRLERYLTKDEILTIYLNQIYLGGGAYGVESAAR 182

Query: 192 AYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLDEKYITKAEYD 251
            YFGK V +L++ E A++ GLP+APS  NP    E    R+  VL+RM +  +I++ E++
Sbjct: 183 TYFGKHVNELSIAECAVLGGLPQAPSKYNPFRDPEATKQRQLYVLRRMFELGWISREEHE 242

Query: 252 AARAEPVLPKYHGAEI-ELNAPYVAEIARAWM--------------VERYGEEAAYTSGM 296
           AA  EP++ K     I    A YV E+ R  +              ++RYGE+A Y +G+
Sbjct: 243 AAVHEPLVYKSMDESIGRAGAWYVEEVRRQLIDFFSEDNVHRLGLKIDRYGEDAVYEAGL 302

Query: 297 NVYTTVDSKLQRAANQAAINNLLAYDERHGYRGAEKELWQVNQPAWSSTQLSEYLSNEPT 356
            V T +  + Q AA +A    L +   RHG+RG  ++L       +   Q   +  +   
Sbjct: 303 QVTTAMMPEHQIAAERALREGLESATRRHGWRGPLQKLKPTEYAGF--LQQENFTPDALA 360

Query: 357 YGDMFPAAVLSVEEKSAQVWVKSYGVQTIAWEDMNWARR-FINDDRQGPLP-KSANEFLA 414
            G    A V  V  + A+V +  Y    I  + M W R   I    +G  P K A + L 
Sbjct: 361 GGGWARALVTKVVAQGAEVRLGQYR-GFIDVKTMTWCRTPNIRVAPEGAAPVKDARKVLE 419

Query: 415 AGQQIWVRPRTQDGAITAWK-------------LTQVPNANTAFVAMNPENGAVTALVGG 461
            G  +WV      G  T++              L Q P+   A V++ P+ G V ALVGG
Sbjct: 420 EGDVVWVSGLGPAGNATSYNPALVSRGGVVQLALEQYPDVQGAIVSIEPQTGDVVALVGG 479

Query: 462 FNFVHNKFNRATQSVRQVGSSIKPFIYSAALNKGLTLATLINDAPINQWDESQGTAWRPK 521
           ++F  ++FNRATQ+ RQ GSS KP +YSAAL+ G T  +++ DAP+   +E     WRP+
Sbjct: 480 YSFTDSQFNRATQARRQPGSSFKPIVYSAALDNGFTAGSVVLDAPVVYINEYTDKVWRPE 539

Query: 522 NSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYLTRFGFKLDQLPRSETIALGA 581
           N    + GP  LR  LA+S+N+  +RV +++G+    E     G +    P   +++LGA
Sbjct: 540 NFEGNFAGPMLLRTALAKSRNLCTIRVAQQIGIPAIIERAKALGLE-PHFPNELSVSLGA 598

Query: 582 GSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFSAEPKVVCHRECSSELDEFAE 641
            +++P+ MAQ ++ FAN G    P  I  +++ +G   +  +P++               
Sbjct: 599 VAVSPLNMAQAYTAFANEGRVSTPRMIVEIKDAWGETLYRRDPEL--------------- 643

Query: 642 QDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGWNGTGWRAQALKRRDIGGKTG 701
                    + IS QNAF+   +L            +   +GT  RA+AL  R + GKTG
Sbjct: 644 --------REAISPQNAFVMASLL-----------KEVVQDGTATRAKAL-GRPVAGKTG 683

Query: 702 TTNDSKDAWYNGYAPGIVGVAWVGFDDHSRNLGKTAPNRNIEDDVSGAESGGKTALPAWV 761
           TTND KDAW+ G++P +V   ++G+D       + AP       +   E+GG+ ALP +V
Sbjct: 684 TTNDEKDAWFMGFSPYLVTGVYIGYD-------QVAP-------MGRFETGGRAALPVFV 729

Query: 762 EFMSLALQDVPVQQKAVPNNIARVRIDRDTGLLTNKLDSSSMFEYFEAGTEPTEYVSEHV 821
            +              +P  I   R+D  TG+L     SSS    F  GT+P+    E +
Sbjct: 730 TYRQGVDHLYQPDDFTMPPGIVYARVDGRTGMLAGPSSSSSYMLPFILGTQPSATSGEAM 789

Query: 822 NESIYSTSSGEEL 834
                   SGE+L
Sbjct: 790 ERGEDDVRSGEDL 802