Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 764 a.a., penicillin-binding protein 1B (RefSeq) from Shewanella sp. ANA-3

 Score =  180 bits (457), Expect = 2e-49
 Identities = 96/262 (36%), Positives = 155/262 (59%), Gaps = 5/262 (1%)

Query: 66  KLIAQFGEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSAS 125
           ++IA  GE R   +  EEMPK +++A++  ED  +YEH+G +P  I RAAF  +++G   
Sbjct: 160 RIIAGDGEDRLF-VPTEEMPKAIVKALLLVEDRSFYEHHGVNPFAILRAAFVNISAGRTV 218

Query: 126 QGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRS-- 183
           QG ST+TQQLA+NFFLS+E+ ++RK++E  +A+ I+   SK+EILE YLN++Y+G     
Sbjct: 219 QGGSTLTQQLAKNFFLSSERSLLRKIREALMAVIIDFRYSKEEILEAYLNEVYMGQDKSR 278

Query: 184 --YGVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLD 241
             +G+G A+Q YFG+ + +LT  + A +    K PS  NP    ER+  RR++VL+ +++
Sbjct: 279 AVHGMGLASQFYFGRPIGELTTAQQAFLVAAIKGPSYYNPWRYPERSQERRDLVLRLLME 338

Query: 242 EKYITKAEYDAARAEPVLPKYHGAEIELNAPYVAEIARAWMVERYGEEAAYTSGMNVYTT 301
              ++ A+Y  A   P+  +     +    P    + +  + ERYG+     SG+ +YTT
Sbjct: 339 SGELSTAQYKVAVESPLGLRNPNKPVHQKLPAFYALVKQELNERYGDALLKQSGVKIYTT 398

Query: 302 VDSKLQRAANQAAINNLLAYDE 323
           +D   Q AA  A      + D+
Sbjct: 399 LDPMAQEAAEIAVTQTFKSLDK 420



 Score =  102 bits (253), Expect = 1e-25
 Identities = 94/350 (26%), Positives = 152/350 (43%), Gaps = 57/350 (16%)

Query: 446 VAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAAL--NKGLTLATLIN 503
           V  +   G + A+VG      + +NRA +  R +GS IKPF+Y+ AL  N   TLA+ + 
Sbjct: 430 VVTDKYTGGIAAMVGDKTPGFDGYNRAVEIRRPIGSLIKPFVYATALAPNSQFTLASPLK 489

Query: 504 DAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYLTR 563
           D PI   +E QG  W P+N    ++G   L   L +S NV  V +   VG+D     L +
Sbjct: 490 DQPITLKNE-QGKTWSPQNFDKKFSGQVSLLTALKKSMNVPTVNLGIAVGVDAVATTLAK 548

Query: 564 FGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFSAE 623
            G++ + L    ++ LGA + +P+ +AQ +   A+ G + +   ++ V      ++   +
Sbjct: 549 SGWQ-EPLNEYPSMLLGAVNGSPLMVAQVYQTLADYGAYRKLTTVTAV------LDSHNQ 601

Query: 624 PKVVCHRECSSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGWNG 683
           P  V                  SP   + I+    FL +  +   +  G        + G
Sbjct: 602 PLPV----------------TRSP-KEQAITPDTDFLVQYAMQQVVRSGTATRLGNAFPG 644

Query: 684 TGWRAQALKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHSRNLGKTAPNRNIE 743
                       + GKTGT+NDS+D+W+ G+    V   WVG DD+    GKT+      
Sbjct: 645 VA----------LAGKTGTSNDSRDSWFAGFDERNVAAIWVGRDDN----GKTS------ 684

Query: 744 DDVSGAESGGKTALPAWV-EFMSLALQDVPVQQKAVPNNIARVRIDRDTG 792
                  SG      A++ E   + L+ +P      P  + +   DRDTG
Sbjct: 685 ---LYGSSGAMAVYQAFLKERPPIGLRSIP------PTGVIQGYFDRDTG 725