Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Type IV pilus biogenesis protein PilM from Pseudomonas fluorescens FW300-N2E2

 Score =  102 bits (255), Expect = 1e-26
 Identities = 89/341 (26%), Positives = 159/341 (46%), Gaps = 24/341 (7%)

Query: 8   GIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKEL--KKGL 65
           GIDI   S+K   L   GD Y +  Y    + A+   + +  + + + + L  L  K   
Sbjct: 14  GIDISSTSVKLLELSRQGDRYRVESYAVEPLPANAVVEKNIAELEGVGQALSRLLAKART 73

Query: 66  PLFSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTE 125
           PL    VA+A+  SAVI+K +++D+ L   ++E  +        P+P++E+++DF +V  
Sbjct: 74  PL--RGVAVAVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDF-EVMG 130

Query: 126 KSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSLLHLWQLASR----AY 181
            S   +      + A +K+ V+ R  A+  AG    ++DV+ ++L   + L ++    + 
Sbjct: 131 VSPRSAERVEVLLAACRKENVEVREAALALAGLTARVVDVEAYALERAFGLLAKQLAASQ 190

Query: 182 RRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESE--------------PSAVN 227
            R    +VDIG T ++L +    ++ + ++   G RQL  E                   
Sbjct: 191 ERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTPEQAGLAKKQG 250

Query: 228 SLNHPLLHDPTQRFIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQR 287
            L    L +  Q F + LV +++R +Q F +     ++  + L+GG A+++GL+  + QR
Sbjct: 251 GLPDDYLSEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQR 310

Query: 288 LSLPCEVLNPFSLFKNNVAKRKRPLV-DGQRFSTAAGLALR 327
           L  P +V NPF+    +       L  D      A GLALR
Sbjct: 311 LGTPTQVANPFTNMALSSKVNAGALAGDAPALMIACGLALR 351