Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., type IV pilus assembly protein PilM from Pseudomonas stutzeri RCH2

 Score = 81.3 bits (199), Expect = 3e-20
 Identities = 77/339 (22%), Positives = 149/339 (43%), Gaps = 20/339 (5%)

Query: 8   GIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGLPL 67
           GIDI   S+K   L   G+ Y +  Y    +  +   + +  + + + + L+ +      
Sbjct: 14  GIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKT 73

Query: 68  FSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTEKS 127
                 +A+  SAVI+K++++D+ L   ELE  +        P+P+EE+++DF +V   +
Sbjct: 74  GCKSAVVAVSGSAVITKMIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDF-EVQGPA 132

Query: 128 LARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSLLHLWQLAS----RAYRR 183
                     + A +K+ V+ R  A+  AG    ++DV+ ++L   + L +      +  
Sbjct: 133 PRAPGRVEVLLAACRKENVEIREAALALAGLTAKVVDVEAYALERSYGLLASQLGSGHGE 192

Query: 184 PDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESEPSAVNSLNH------------ 231
               +VDIG T ++L +    +  + ++   G RQL  E      L+             
Sbjct: 193 LTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSQEEAGLAKKQGGL 252

Query: 232 PLLHDP--TQRFIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQRLS 289
           P  +D      F + +V +++R +Q F +      +  + L+GG A++ GL+  + Q++ 
Sbjct: 253 PDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHMIQQKIG 312

Query: 290 LPCEVLNPFS-LFKNNVAKRKRPLVDGQRFSTAAGLALR 327
               V NPF+ +  ++         D      A GLALR
Sbjct: 313 THTLVANPFADMALSSKVNAGALASDAPALMIACGLALR 351