Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Type IV pilus assembly protein PilM from Pseudomonas syringae pv. syringae B728a

 Score = 97.8 bits (242), Expect = 4e-25
 Identities = 82/339 (24%), Positives = 152/339 (44%), Gaps = 20/339 (5%)

Query: 8   GIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGLPL 67
           GIDI   S+K   L   G  Y +  Y    + A+   + +  + + + + L  +      
Sbjct: 14  GIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKAKT 73

Query: 68  FSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTEKS 127
               VA+A+  SAVI+K +++D+ L   ++E  +        P+P+EE+++DF +V   S
Sbjct: 74  SVKNVAVAVAGSAVITKTIEMDAGLSDDDMENQLKLEADQYIPYPLEEVAIDF-EVQGYS 132

Query: 128 LARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSLLHLWQLAS----RAYRR 183
           +         + A +K+ V+ R  A+  AG    ++DV+ ++L   + L +      +  
Sbjct: 133 VRNPERVEVLLAACRKENVEVREAALALAGLTARVVDVEAYALERSFGLLAAQLGNGHDE 192

Query: 184 PDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESE--------------PSAVNSL 229
               +VDIG T ++L +    ++ + ++   G RQL  E                    L
Sbjct: 193 LTVAVVDIGATMTTLSVLHHGRIIYTREQLFGGRQLTDEIQRRYGLSMEEAGLAKKQGGL 252

Query: 230 NHPLLHDPTQRFIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQRLS 289
               + +    F + LV +++R +Q F +     S+  + L+GG A++SGLE  + +R+ 
Sbjct: 253 PDDYVSEVLDPFKEALVQQVSRSLQFFFAAGQYNSVDHIMLAGGTASISGLEHLIQRRIG 312

Query: 290 LPCEVLNPFS-LFKNNVAKRKRPLVDGQRFSTAAGLALR 327
            P  V NPF+ +  ++         D      A GLALR
Sbjct: 313 TPTMVANPFADMALSSKVNAGALASDAPALMIACGLALR 351