Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., type IV pilus assembly protein PilM from Synechococcus elongatus PCC 7942

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 81/345 (23%), Positives = 150/345 (43%), Gaps = 25/345 (7%)

Query: 8   GIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGLPL 67
           G++I    I  A +   G+   L  +  + +   +F D   LD   +   L+       +
Sbjct: 17  GVEITPERINLAHIGRKGNRLQLQDFVSVELPDGLFQDGRVLDSFSLSDLLRTAINDNRI 76

Query: 68  FSHKVAIAIPDSAVISKVLQIDSDLEQREL-EFAVYQAFSHQSPFPVEELSLDFVKVTEK 126
            + +V+ A+P   VI+++L + ++L+  EL E  + Q  +   PFP EE  +D++K+ + 
Sbjct: 77  RTKRVSTAVPGREVITRLLPMPAELDDAELRETLINQEAALFLPFPREEADIDYLKL-DY 135

Query: 127 SLARSSTTTFQVY--ATKKDVVDSRLHAVKKAGFEPVLMDVQVHSLLHLWQLASRAYRRP 184
            L         V   AT++ V D  L    +AG  P +++V   +L+   + A R Y   
Sbjct: 136 FLDADEVEKLHVLLVATRRQVTDVYLDLFAQAGLTPDIVEVGSFALIRTIREALRQYGLQ 195

Query: 185 DWM-LVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESEPSAVN---------------- 227
           + + L+++ Y  + + +       F + + +GT+Q +   +                   
Sbjct: 196 EAVILLNVEYDLTEIVIIVGGVPRFSRTIAMGTQQWQRAAAQAGIDNTGRGIDFLQGRSF 255

Query: 228 SLNHP---LLHDPTQRFIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDAL 284
           +L  P   LL     R + EL D++ R    + S      +  L+++G G+ L  L + L
Sbjct: 256 TLLEPPADLLSQALARSVTELCDEVRRSADFYLSQETDIEVAKLYVAGPGSALPTLPEFL 315

Query: 285 YQRLSLPCEVLNPFSLFKNNVAKRKRPLVDGQRFSTAAGLALRGL 329
            QRL LP E+++P       VA+    L +        GLA RG+
Sbjct: 316 GQRLGLPVELVDPVEGLGLEVAENLY-LPNRADVGVVLGLATRGV 359