Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., type IV pilus biogenesis protein PilM (RefSeq) from Shewanella amazonensis SB2B

 Score =  100 bits (248), Expect = 7e-26
 Identities = 82/344 (23%), Positives = 161/344 (46%), Gaps = 26/344 (7%)

Query: 6   VTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGL 65
           + GIDIG H +KA +L    D Y +V +  + V      D+   D   +V  L++L++ L
Sbjct: 13  MVGIDIGSHEVKAILLSKTADGYKIVSHAAVPVKKGAVNDHDIRDAAAVVDCLRQLRRTL 72

Query: 66  PLFSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTE 125
           P      A+A+  SAV++KV+ +D+ L + E+E  +     +  P+ ++E+S+DF  ++ 
Sbjct: 73  PKSCKFAAVAVSGSAVMTKVIYMDASLSEAEMEAQIEIEADNLIPYSLDEVSIDFETLSV 132

Query: 126 KSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSL-----LHLWQLASRA 180
            S+  S      + A + + +D+R+ A+ +   E  ++D++ ++L     L   QL   A
Sbjct: 133 NSIDPSKVDVL-LSACRTENIDARVDALDEVDLETKVVDIEGYALGRSAELIFGQLPEGA 191

Query: 181 YRRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQL-------------ESEPSAV- 226
            ++   M VDIG   ++  +    +  F ++   G  Q              ++E + V 
Sbjct: 192 SQKVVAM-VDIGANMTTFAVVDQGETAFTREQAFGGEQFTQSILSFYGMSYEQAEKAKVE 250

Query: 227 NSLNHPLLHDPTQRFIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQ 286
             L    + +    F  +L+ +I R +Q++ +  G   +  + L GG + L G+ + L  
Sbjct: 251 GDLPRNYMFEVLSPFQTQLLQQIKRTLQIYCTSSGRDKVDYIVLCGGTSRLEGMANLLTN 310

Query: 287 RLSLPCEVLNPFS---LFKNNVAKRKRPLVDGQRFSTAAGLALR 327
            L +   + +P        ++V    +P +   ++  A GLALR
Sbjct: 311 ELGVHTIIADPLQGNLHADDSVKSTLQPSI--SKYMVACGLALR 352