Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., type IV pilus assembly protein PilM (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (257), Expect = 7e-27
 Identities = 82/345 (23%), Positives = 161/345 (46%), Gaps = 28/345 (8%)

Query: 6   VTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGL 65
           + GIDIG H IKA +L    D Y ++ +  + V      D+   D   +++ L+ +K+ L
Sbjct: 13  MVGIDIGSHEIKAILLSKTADGYKILSHAAVPVKKGAVNDHEIRDSDAVLESLRLIKRSL 72

Query: 66  PLFSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTE 125
           P      A A+  SAV++KV+ +D+ L + E+E  +     +  P+ ++E+S+DF  ++ 
Sbjct: 73  PKSVKYAAAAVSGSAVMTKVIYMDASLSEEEMETQIEIEADNLIPYSLDEVSIDFETLSV 132

Query: 126 KSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSLLHLWQLASRAYRRPD 185
            S A  S     + A + + +D+R+ ++     E  ++DV+ ++L   ++L   A + PD
Sbjct: 133 NS-ADPSKVDVLLSACRTENIDARVDSLDDINLEAKVIDVEGYALGRSFELV--AAQLPD 189

Query: 186 W------MLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESEPSAVNSLNHP------- 232
                   LVDIG   ++  +    +  F ++   G  Q      +   ++H        
Sbjct: 190 GAEDKVVALVDIGANMTTFAVVEKGETTFIREQAFGGEQFTQSILSFYGMSHEQAEKAKL 249

Query: 233 -------LLHDPTQRFIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALY 285
                   + +    F  +L+ +I R +Q++ +  G   +  + L GG + L G+ + L 
Sbjct: 250 EGDLPRNYMFEVLSPFQTQLLQQIKRTLQIYCTSSGKDKVDHIVLCGGTSKLEGMANLLT 309

Query: 286 QRLSLPCEVLNPF--SLFKNNVAKRK-RPLVDGQRFSTAAGLALR 327
             L +   + +PF   L  +   K + +P ++  ++  A GLALR
Sbjct: 310 NELGVHTIIADPFLGCLHADEQVKTQLQPTIN--KYMVACGLALR 352