Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., type IV pilus biogenesis protein PilM (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (262), Expect = 2e-27
 Identities = 86/344 (25%), Positives = 164/344 (47%), Gaps = 26/344 (7%)

Query: 6   VTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGL 65
           + GIDIG H +KA +L    D Y ++ +  + V      D+   D   +V+ L+++K+ L
Sbjct: 13  MVGIDIGSHEVKAILLGKTADGYKILSHAAVPVKKGAINDHDIRDADAVVECLRQIKRIL 72

Query: 66  PLFSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTE 125
           P      A+A+  SAV++KV+ +D+ L + E+E  +     +  P+ ++E+S+DF  +  
Sbjct: 73  PKSVKYAAVAVSGSAVMTKVIYMDASLSEEEMEAQIEIEADNLIPYSLDEVSIDFETLNV 132

Query: 126 KSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSL-----LHLWQLASRA 180
            S   S      + A + D +D+R+ A+ +   E  ++DV+ ++L     L L QL   A
Sbjct: 133 NSTDPSKVDVL-LSACRTDNIDTRVDALDEVELETKVVDVEGYALGRAVELVLGQLPEGA 191

Query: 181 YRRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLG----TRQL---------ESEPSAV- 226
            R+    +VDIG   ++ C+    +  F ++   G    T+ +         ++E + + 
Sbjct: 192 -RQKAVAMVDIGANMTTFCVVESGETTFIREQAFGGELFTQSILSFYGMSYEQAEKAKIE 250

Query: 227 NSLNHPLLHDPTQRFIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQ 286
             L    + +    F  +L+ +I R +Q++ +  G   +  L L GG + L G+ + L  
Sbjct: 251 GDLPRNYMFEVLSPFQTQLLQQIKRTLQIYCTSSGKDKVDYLVLCGGTSKLEGMANLLTN 310

Query: 287 RLSLPCEVLNPFS---LFKNNVAKRKRPLVDGQRFSTAAGLALR 327
            L +   + +PF        +V    +P +   ++  A GLALR
Sbjct: 311 ELGVHTIIADPFQGCLHADESVKNILQPSI--SKYMVACGLALR 352