Pairwise Alignments

Query, 338 a.a., pilus assembly protein PilM from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., type IV pilus assembly protein PilM (RefSeq) from Shewanella sp. ANA-3

 Score =  107 bits (267), Expect = 5e-28
 Identities = 87/344 (25%), Positives = 164/344 (47%), Gaps = 26/344 (7%)

Query: 6   VTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGL 65
           + GIDIG H +KA +L    D Y ++ +  + V      D+   D   +V+ LK++K+ L
Sbjct: 13  MVGIDIGSHEVKAILLSKTADGYKILSHAAVPVKKGAINDHDIRDADAVVECLKQIKRIL 72

Query: 66  PLFSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTE 125
           P      A+A+  SAV++KV+ +D+ L + E+E  +     +  P+ ++E+S+DF  +  
Sbjct: 73  PKSVKYAAVAVSGSAVMTKVIYMDASLSEEEMEAQIEIEADNLIPYSLDEVSIDFETLNV 132

Query: 126 KSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSL-----LHLWQLASRA 180
            S   S      + A + D +D+R+ A+ +   E  ++DV+ ++L     L L QL   A
Sbjct: 133 NSTDPSKVDVL-LSACRTDNIDARVDALDEVELETKVVDVEGYALGRAVELVLGQLPEGA 191

Query: 181 YRRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLG----TRQL---------ESEPSAV- 226
            R+    +VDIG   ++ C+    +  F ++   G    T+ +         ++E + + 
Sbjct: 192 -RQKAVAMVDIGANMTTFCVVESGETTFIREQAFGGELFTQSILSFYGMSYEQAEKAKIE 250

Query: 227 NSLNHPLLHDPTQRFIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQ 286
             L    + +    F  +L+ +I R +Q++ +  G   +  L L GG + L G+ + L  
Sbjct: 251 GDLPRNYMFEVLSPFQTQLLQQIKRTLQIYCTSSGKDKVDYLVLCGGTSKLEGMANLLTN 310

Query: 287 RLSLPCEVLNPFS---LFKNNVAKRKRPLVDGQRFSTAAGLALR 327
            L +   + +PF        +V    +P +   ++  A GLALR
Sbjct: 311 ELGVHTIIADPFQGCLHADESVKNILQPSI--SKYMVACGLALR 352