Pairwise Alignments

Query, 199 a.a., fimbrial protein from Vibrio cholerae E7946 ATCC 55056

Subject, 206 a.a., type IV pilus biogenesis protein PilO (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.8 bits (216), Expect = 1e-22
 Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 4/198 (2%)

Query: 4   MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKAT 63
           ++   +++ + I  WP   ++   +L+ L +  AGY+  L    D  +  + +E  ++  
Sbjct: 5   LSQFNDIDFENIGGWPNQVKVFFAILLALCVFAAGYFVVLSDAIDIFSSEQDKELQLRDD 64

Query: 64  LRIKANKVAVLPQIQAQLDELKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRID 123
            + K    A L   + QL  ++ ++  LL+ LP + E+  +L  +     D+ L    ++
Sbjct: 65  FKNKYQLAANLKLYREQLAVMEGQFAELLKMLPSENEMPGLLDDLTFAATDAGLRIKSLN 124

Query: 124 WGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRIINFDDVDWQRVSQESSTLHFR 183
           W     ++F    P+ + +TG YH IG+    +AKLPRI++  D   +R   +S  L   
Sbjct: 125 WEAEIGRDFYIEFPIKMSVTGDYHQIGNMVSGVAKLPRIVSLHDFTIKR--DDSGNLAMD 182

Query: 184 VRAYTYQFKQ--EVDDEK 199
           + A TY+FK+  E+  EK
Sbjct: 183 ILAKTYRFKEGAELPPEK 200