Pairwise Alignments

Query, 172 a.a., fimbrial protein from Vibrio cholerae E7946 ATCC 55056

Subject, 171 a.a., pilus assembly protein, PilQ (RefSeq) from Shewanella loihica PV-4

 Score =  105 bits (263), Expect = 3e-28
 Identities = 60/171 (35%), Positives = 90/171 (52%), Gaps = 3/171 (1%)

Query: 1   MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKG 60
           MK  PL   L+  L+L GC  ++ DL  +V   + +    V  LK   +FE   YQ    
Sbjct: 1   MKKLPL---LIVGLMLAGCMGDRSDLELFVTTTKAQHVARVPPLKEPPKFEHFAYQAELM 57

Query: 61  REPFVLPKEALVQNQPLAKADCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQT 120
           R PFV P   L +       DC QP  + + G LE Y L  L+++G +S   +I AL++T
Sbjct: 58  RSPFVPPSRELTEEVVDTTKDCLQPDLQRRKGRLETYALDNLKMRGTLSEDKNIWALIET 117

Query: 121 PAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLGCWNQRNVKLAL 171
             GSV ++  G+YVG+ +G++ +V    + I E +PDG GCW +R   + L
Sbjct: 118 NDGSVYRLGVGEYVGLYHGRIAKVTQQMVEIVELIPDGTGCWAERMSNMEL 168