Pairwise Alignments

Query, 172 a.a., fimbrial protein from Vibrio cholerae E7946 ATCC 55056

Subject, 171 a.a., type IV pilus biogenesis protein PilP (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  101 bits (251), Expect = 8e-27
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 5/174 (2%)

Query: 1   MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKG 60
           MK  PL   L   L L+GC   + DL  +V   + +    +  LK   +FE   YQ    
Sbjct: 1   MKTLPL---LAISLFLMGCIGERSDLELFVTTTKAQHVAHIPPLKEPPKFEHFAYQAELM 57

Query: 61  REPFVLPKEALVQNQPLAKADCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQT 120
           R PFV P   L +       +C QP  + + G LE Y L  L+++G +S      AL++T
Sbjct: 58  RSPFVPPSRELTEEVVDTSKNCLQPDLKRRKGRLETYALDNLKMRGTLSEANLTWALIET 117

Query: 121 PAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLGCWNQR--NVKLALK 172
             GSV ++  G+Y+G+ NG++ +V    + + E +PDG GCW++R  N++L+ K
Sbjct: 118 NDGSVYRMGVGEYLGLFNGRIAKVAPQNVEVVELIPDGSGCWSERTNNIELSGK 171