Pairwise Alignments

Query, 172 a.a., fimbrial protein from Vibrio cholerae E7946 ATCC 55056

Subject, 171 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  107 bits (266), Expect = 1e-28
 Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 5/174 (2%)

Query: 1   MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKG 60
           MK  PL   L   L L+GC  ++ DL  +V   + +    +  LK   +FE   YQ    
Sbjct: 1   MKLLPL---LALSLFLMGCVGDRSDLELFVTTTKAQHVAHIPPLKEPPKFEHFAYQAELM 57

Query: 61  REPFVLPKEALVQNQPLAKADCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQT 120
           R PFV P   L +       +C QP  + + G LE Y L  L+++G +S G SI AL++T
Sbjct: 58  RSPFVPPSRELTEEVVDTSKNCLQPDLKRRKGRLETYALDNLKMRGTLSEGNSIWALIET 117

Query: 121 PAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLGCWNQR--NVKLALK 172
             GSV ++  G+Y+G+ NG + +V    + + E +PDG GCW++R  N++L+ K
Sbjct: 118 NDGSVYRMGVGEYLGLFNGHIAKVTSQNVEVVELIPDGSGCWSERTNNIELSGK 171