Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., General secretion pathway protein D from Pseudomonas fluorescens FW300-N2E2

 Score =  118 bits (295), Expect = 1e-30
 Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 22/296 (7%)

Query: 292 SISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGV 351
           +I  D  TN+LLI         +RE+I+ LD    QV IE+ IV V E +  E GV+W  
Sbjct: 430 TIQADATTNTLLISAPDPLYRNLREVIDLLDQRRAQVVIESLIVEVGEDDASEFGVQWQT 489

Query: 352 MSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTL 411
            +  GS  +GG    NL    L  + +  +D      +     N   +   V   G G +
Sbjct: 490 GNLGGSGVIGGV---NLGGTALNLNGKTSID------VLPQGLNLGVVNGTVDIPGIGKI 540

Query: 412 LDLEL--SALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESS----SSGAS----- 460
           LDL++   AL+++    ++S+P L+T + + A I  G  IP++  S      G S     
Sbjct: 541 LDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQ 600

Query: 461 TVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVN 520
           TV  ++  L L V PQI+    + LD+            + TG  +  + + I T +L++
Sbjct: 601 TVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDNRASSTTG--IVTNKRAIDTSILLD 658

Query: 521 NGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           +G+ +VLGG+ Q   + S D VP L  +P +GALFR    Q+ K+ L++F+ P ++
Sbjct: 659 DGQIMVLGGLLQDGYSQSNDAVPWLSTIPGIGALFRNERRQITKTNLMVFLRPYII 714



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 35/179 (19%), Positives = 83/179 (46%), Gaps = 14/179 (7%)

Query: 166 ISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDG-VPWQQVLDII---LQVKG 221
           +++NF +  ++ V++ ++   G   +V   V GNLTL  +G VP  Q  D++   L+++G
Sbjct: 99  VTLNFVEADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQG 158

Query: 222 LDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGE 281
                 G V  + P+ +  L         + A     + +   ++ +  A ++  ++   
Sbjct: 159 FSVVDVGGVAQVVPEADAKLLGGPIYSADKPAG--NGMLTRTFRLQYENAVNLIPVLR-- 214

Query: 282 GNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEG 340
               ++S    I+     N++++ +  +N++ + ++IE +D P     I+  +V +  G
Sbjct: 215 ---PIVSPNNPINAYPGNNTIVVTDYAENLSRVAQLIEGIDTP---SAIDTDVVPIHNG 267