Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 696 a.a., Type IV pilus biogenesis protein PilQ from Pseudomonas fluorescens FW300-N2E2

 Score =  382 bits (980), Expect = e-110
 Identities = 212/548 (38%), Positives = 323/548 (58%), Gaps = 9/548 (1%)

Query: 31  ASSMVFSAESATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDV 90
           AS+    A       +  +DF+   +    ++++L+ PS   D+Q+ +  + +   +T +
Sbjct: 147 ASAAPARASGPVGKAIRGVDFQRGTQGEGNVVIDLSDPSIAPDIQEREGKIILNFARTQL 206

Query: 91  ADDKLYLLDVKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKAD 150
            +     LDVKDF+TPV+ V          + +   G F +        L V +  +  D
Sbjct: 207 PEPLRVRLDVKDFATPVQFVNASAGSDRATISIEPSGTFDYSTYQTDNKLTVSVRPMTVD 266

Query: 151 EKPKPKSVLEK-EGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPW 209
           +  K  +      G+ +S+NFQDI VR+VLQLIAD+   NLV SD+V G +TLRL  VPW
Sbjct: 267 DLQKRNADRAAYSGEKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPW 326

Query: 210 QQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFA 269
            Q LD++L+ KGLDKR  GNV+L+AP +E+  RE+Q LE  +   +L  L+ E++++N+A
Sbjct: 327 DQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYA 386

Query: 270 KASDIAAMIGGEGNVN-MLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQV 328
           KA+DIA +     +      ERG+I++DERTN+++  +  D +  +R I+  LDIPV+QV
Sbjct: 387 KATDIAKLFQSVTSAEAKADERGTITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQV 446

Query: 329 QIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVN 388
            IEARIV       + LGVRWG     GS    G+  S+    G       P     N  
Sbjct: 447 MIEARIVEANVDYDKSLGVRWG-----GSIQNKGNWSSSGVTTGDSTTIGTPGSTSTNQP 501

Query: 389 LASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 448
                A+ ++    +A +    LLDLEL+A++     EI+S P+++T++K+ A I +GTE
Sbjct: 502 FVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTE 561

Query: 449 IPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSI 508
           IPY E+SSSGA++V+FK+A LSL+VTPQITPDNR+++++ VT+D      K    +   I
Sbjct: 562 IPYQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNK--VNDVPPI 619

Query: 509 DTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELL 568
               +  +VLVN+GET+V+GG+F ++ +  VDKVP LGD+P LG LFRR      KSELL
Sbjct: 620 KKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSDSKSELL 679

Query: 569 IFVTPKVV 576
           +F+TP+++
Sbjct: 680 VFLTPRIM 687