Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., General secretion pathway protein D from Pseudomonas fluorescens FW300-N2E2

 Score =  112 bits (280), Expect = 5e-29
 Identities = 91/336 (27%), Positives = 153/336 (45%), Gaps = 39/336 (11%)

Query: 261 SEIIKINFAKASDIAAMIGGEGN--------VNMLSERGS----ISIDERTNSLLIRELP 308
           + +I++  + A  +A ++ G G                GS    I  DE  N+L++   P
Sbjct: 269 ARVIRLRHSDAKQLAEVLEGVGQDRKTTPVLAGQRETAGSSPFRIKADESQNALVMIAEP 328

Query: 309 DNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNL 368
             + +I  I+  LD P  QV I A IV V     E LGV+WGV S + +  +        
Sbjct: 329 AQVRIIENIVRELDQPRAQVLIHAAIVEVSGDISEALGVQWGVKSGSATGGIN------- 381

Query: 369 WQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEII 428
                     FP  +   V L     +  +      +LG G      +SAL +++ + ++
Sbjct: 382 ----------FPGTDIPIVGLDFNKLDKKTEG-AFLRLG-GDRFSALVSALASDTHSNLL 429

Query: 429 SSPRLITTNKQPAYIEQGTEIPY----LESSSSGA----STVAFKKAVLSLKVTPQITPD 480
           S+P L+T + Q A I  G  +P+      +S +GA    +TV  K   +SLKV P I   
Sbjct: 430 STPSLLTLDNQEAEIIVGQNVPFKTGSYATSGNGADNPFTTVERKDVGISLKVKPYINEG 489

Query: 481 NRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVD 540
           + L L++         +V       +  + + + + +L ++GE +V+GG+ + S+ +   
Sbjct: 490 STLRLEVEQEVSDIAPSVSGVDSSDLITNKRALKSTILADDGEIIVIGGLIRDSVRSQQS 549

Query: 541 KVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
            VPLL  +P LGALFR   +   KS L++F+ P +V
Sbjct: 550 GVPLLRSIPYLGALFRWNRDTQTKSNLMVFLRPTIV 585



 Score = 40.4 bits (93), Expect = 2e-07
 Identities = 20/83 (24%), Positives = 42/83 (50%)

Query: 263 IIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLD 322
           ++++  A+A DIA ++   G        G +  D R+N L+I   P     + ++  +LD
Sbjct: 200 VVRLKHAQAGDIAPLVEASGGKREGETAGVVIADARSNRLVIIGAPAVRQRLVDLARTLD 259

Query: 323 IPVKQVQIEARIVTVKEGNLEEL 345
           +P    Q  AR++ ++  + ++L
Sbjct: 260 VPAAASQDNARVIRLRHSDAKQL 282