Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 786 a.a., type II secretion system protein GspD from Pseudomonas fluorescens FW300-N2C3

 Score =  121 bits (303), Expect = 1e-31
 Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 24/322 (7%)

Query: 268 FAKASDIAAMIGGEGNVNMLSERGSISI--DERTNSLLIRELPDNIAVIREIIESLDIPV 325
           +A+ S+ A     +   +     G ++I  D  TN+LLI         +RE+I+ LD   
Sbjct: 404 YAQGSNGATSASTKNEQSTAFSAGGVTIQADATTNTLLISAPDPLYRNLREVIDLLDQRR 463

Query: 326 KQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFL 385
            QV IE+ IV V E +  E GV+W   +  GS  +GG    NL   GL  + +  +D   
Sbjct: 464 AQVVIESLIVEVGEDDASEFGVQWQTGNLGGSGVIGGV---NLGGSGLNLNGKTSID--- 517

Query: 386 NVNLASTSANASSIAFQVAKLGSGTLLDLEL--SALQNESKAEIISSPRLITTNKQPAYI 443
              +     N   +   V   G G +LDL++   AL+++    ++S+P L+T + + A I
Sbjct: 518 ---VLPQGLNLGVVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNEAASI 574

Query: 444 EQGTEIPYLESS----SSGAS-----TVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRR 494
             G  IP++  S      G S     TV  ++  L L V PQI+    + LD+       
Sbjct: 575 FVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSV 634

Query: 495 GETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGAL 554
                + TG  +  + + I T +L+++G+ +VLGG+ Q   + S D VP L  +P +GAL
Sbjct: 635 DNRASSTTG--IVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSTIPGIGAL 692

Query: 555 FRRTYEQMGKSELLIFVTPKVV 576
           FR    Q+ K+ L++F+ P ++
Sbjct: 693 FRNERRQITKTNLMVFLRPYII 714



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 35/179 (19%), Positives = 83/179 (46%), Gaps = 14/179 (7%)

Query: 166 ISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDG-VPWQQVLDII---LQVKG 221
           +++NF +  ++ V++ ++   G   +V   V GNLTL  +G VP  Q  D++   L+++G
Sbjct: 99  VTLNFVEADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQG 158

Query: 222 LDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGE 281
                 G V  + P+ +  L         + A     + +   ++ +  A ++  ++   
Sbjct: 159 FSVVDVGGVAQVVPEADAKLLGGPIYSADKPAG--NGMLTRTFRLQYENAVNLIPVLR-- 214

Query: 282 GNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEG 340
               ++S    I+     N++++ +  +N++ + ++IE +D P     I+  +V +  G
Sbjct: 215 ---PIVSPNNPINAYPGNNTIVVTDYAENLSRVAQLIEGIDTP---SAIDTDVVPIHNG 267