Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., type IV pilus secretin (or competence protein) PilQ from Pseudomonas stutzeri RCH2

 Score =  385 bits (988), Expect = e-111
 Identities = 219/535 (40%), Positives = 325/535 (60%), Gaps = 12/535 (2%)

Query: 46  LENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLYLLDVKDFST 105
           +ENIDFR   + A  +I+ L+ PS    +++    + +   KT + +     LDV+DF+T
Sbjct: 158 IENIDFRRGDDGAGNVIISLSDPSISPTIEEQGGKIRVIFDKTQLPESLRVRLDVQDFAT 217

Query: 106 PVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSV-LEKEGK 164
           PV  V+   +     + +   G + +        L + I  L  DE  K K+      G+
Sbjct: 218 PVRFVDSTAQSGKASIAIEPTGRYDYLAYQTDNKLTISIKPLTEDEADKRKADRFAYSGE 277

Query: 165 LISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDK 224
            +S+NFQDI VR+VLQLIAD+   NLV SD+V GN+TLRL  VPW Q LD++L+ KGLDK
Sbjct: 278 KLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNVPWDQALDLVLKTKGLDK 337

Query: 225 RVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNV 284
           R  GNV+L+AP +E+  RE+Q LE  R   EL  L+ E++++N+AKA+DIA +     N 
Sbjct: 338 RQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTNT 397

Query: 285 -NMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLE 343
                ERGS+++D+RTN+++  +  + +  +R I+  LDIPV+QV IEARIV       +
Sbjct: 398 QGQTDERGSMAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDK 457

Query: 344 ELGVRWG--VMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAF 401
            LGVRWG   +  NG  +V G+   +L  +G  + DE     F  V++  T+  A     
Sbjct: 458 ALGVRWGGTQLFANGRGAVYGN--DDLGDEGGNSGDE-SSGNFPFVDMGVTNRTA---GI 511

Query: 402 QVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGAST 461
            +  +    +LDLELSA++     E++S P+++T +K+ A I +G+EIPY E+SSSGA++
Sbjct: 512 GIGYITDNLILDLELSAMEKSGNGEVVSQPKVMTADKETAKILKGSEIPYQEASSSGATS 571

Query: 462 VAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNN 521
             F +A LSL+VTPQITPDNR+++++ VT+D              +I    +  ++LVN+
Sbjct: 572 TTFVEAALSLEVTPQITPDNRIIMEVKVTKDE--PDFANDVNGTPTIRKNEVNAKILVND 629

Query: 522 GETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           GETVV+GG+F ++ + SVDKVP LGDLP LG LFRR      KSELLIF+TPK++
Sbjct: 630 GETVVIGGVFSNTQSRSVDKVPFLGDLPYLGRLFRRDIVADSKSELLIFLTPKIL 684