Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., general secretion pathway protein D from Pseudomonas stutzeri RCH2

 Score =  123 bits (308), Expect = 3e-32
 Identities = 101/340 (29%), Positives = 162/340 (47%), Gaps = 40/340 (11%)

Query: 261 SEIIKINFAKASDIAAMIG--GEGNVNMLSERGS--------ISIDERTNSLLIRELPDN 310
           + +I++    A  +A  +G   EG  N  S   +        I  DE  N+L++   P+ 
Sbjct: 269 TRVIRLRHNDAKSLAETLGDISEGLKNPESGEATTTRPQNILIRADESLNALVLLADPEL 328

Query: 311 IAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQ 370
           I  +  I+  LD+P  QV +EA IV V     + LGV+W V    GS    G +  N   
Sbjct: 329 IGTMESIVRQLDVPRAQVMVEAAIVEVSGDITDALGVQWAV-DARGSRGGAGGV--NFGN 385

Query: 371 KGLLADDEFPVDEFLNVNLASTSANASSIAFQV---AKLGSGTL-LDLELSALQNESKAE 426
            G+            +V     + N + I   +   A +G GT      ++AL + SK+ 
Sbjct: 386 TGI------------SVGSVLNAINENEIPDNLPDGAIIGIGTRSFGALITALSSNSKSN 433

Query: 427 IISSPRLITTNKQPAYIEQGTEIPYLESS----SSGAS----TVAFKKAVLSLKVTPQIT 478
           ++S+P L+T + Q A I  G  +P+   S    ++GA+    T+  +   ++LKVTP I 
Sbjct: 434 LLSTPSLLTLDNQEAEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPHIN 493

Query: 479 PDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQR--IGTQVLVNNGETVVLGGIFQHSIN 536
               L L +         +    T +AV + T +  I + +L  +G+ +VLGG+ Q  + 
Sbjct: 494 EGATLRLQIEQEISSIAPSASL-TAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDVT 552

Query: 537 NSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
            +  KVPLLGD+P+LGALFR T E   K  L++F+ P V+
Sbjct: 553 RTNAKVPLLGDIPLLGALFRSTQETHIKRNLMVFLRPTVI 592



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 21/163 (12%)

Query: 167 SINFQDIPVRNVLQLIADYNGFNLVVSD------SVVGNLTLRLDGVPWQQVLDIILQVK 220
           +IN +D  +R  +  I+  +G   +V        SVV N TL L  V   Q+   ++   
Sbjct: 42  TINLKDADIRAFIDQISQLSGQTFIVDPRVKGQVSVVSNATLSLSEV--YQLFLSVMATH 99

Query: 221 GLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGD-LKSEIIKINFAKASDIAAMIG 279
           G      G+V  + P  E       A  +A      GD L++ +I++    A+++  +I 
Sbjct: 100 GFSVLTQGDVARVVPNAE-------AKAEAGGGPSGGDQLETRVIQVQHTSAAELIPLIR 152

Query: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLD 322
                 ++ + G ++     N+L+I +   NIA I+ ++  LD
Sbjct: 153 P-----LVPQFGHLAAVSSANALIISDRSANIARIQNLVRQLD 190