Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., type II and III secretion system protein:NolW-like protein from Pseudomonas syringae pv. syringae B728a

 Score =  123 bits (309), Expect = 2e-32
 Identities = 87/308 (28%), Positives = 150/308 (48%), Gaps = 29/308 (9%)

Query: 279 GGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVK 338
           G  G    L     I+  + +N LL+R  P     I   I+ LD P  QVQIE RI+ VK
Sbjct: 457 GSSGASKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVK 516

Query: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398
                ++GV+W +    G+    G++ +    +G +                  +A AS+
Sbjct: 517 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIG--------------TGGAALAST 562

Query: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESS--- 455
            AF  + + +   L + L AL+   + +++S+P L+  N Q A I+ G  IP  ++S   
Sbjct: 563 DAFFYSFVSNN--LQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINT 620

Query: 456 ----SSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS---I 508
                +  S+V + +  + L V P+I P   + +D+   Q +  +   +GT +A     I
Sbjct: 621 NTNTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDI---QQQVSDADSSGTTDANGNPRI 677

Query: 509 DTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELL 568
            T+ + TQV   +G+TV+LGG+ +     +V+ VP LG +P L  LF  T +   ++EL+
Sbjct: 678 STRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKDRTELI 737

Query: 569 IFVTPKVV 576
           + +TP+V+
Sbjct: 738 VLITPRVI 745