Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 718 a.a., type II and III secretion system protein:NolW-like protein:NolW-like protein from Pseudomonas syringae pv. syringae B728a

 Score =  383 bits (984), Expect = e-110
 Identities = 217/543 (39%), Positives = 333/543 (61%), Gaps = 17/543 (3%)

Query: 41  ATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLYLLDV 100
           A    + N+DF+  +     ++++L++PS   D+Q+    + ++  KT + +     LDV
Sbjct: 177 AGVKAIRNVDFQRGELGEGNVVIDLSNPSIAPDIQEQGGKIRVDFAKTQLPEPLRVRLDV 236

Query: 101 KDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLK---ADEKPKPKS 157
           KDF+TPV+ V          +++   G F +        L + +  L     D +   K 
Sbjct: 237 KDFATPVQFVSASATGDKASILIEPSGAFDYSAFQTENKLTISVRPLTNEDLDRRAADKP 296

Query: 158 VLEKEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIIL 217
           V    G+ +S+NFQDI VR+VLQLIAD+   NLV SD+V G +TLRL  VPW Q LD++L
Sbjct: 297 VYT--GEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPWDQALDLVL 354

Query: 218 QVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAM 277
           + KGLDKR  GNV+L+AP +E+  RE+Q LE  +   EL  L+ E++++N+AKA+DIA +
Sbjct: 355 KTKGLDKRKVGNVLLVAPADEIAARERQELESLKQIAELAPLRRELLQVNYAKAADIAKL 414

Query: 278 IGGEGNV-NMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVT 336
                +  +   ERGSI++D+RTN+++  +  + +  +R I+  LDIPV+QV IEARIV 
Sbjct: 415 FQSVTSAESKADERGSITVDDRTNNIIAYQTQERLDELRRIVSQLDIPVRQVMIEARIVE 474

Query: 337 VKEGNLEELGVRWGVMSTNGSHS---VGGSIESNLWQKGLLADDEFPVDEFLNVNLASTS 393
                 ++LGVRWG  STN S S       +++N  + G  + +  P     NV      
Sbjct: 475 ANVDYNKQLGVRWG-GSTNTSGSGKWTTYGLDNNGDEAGNTSGNLTP-----NVPFVDLG 528

Query: 394 ANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE 453
           A  ++    +  + + TLLDLELSA++     EI+S P+++T++K+ A I +GTEIPY E
Sbjct: 529 AAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQE 588

Query: 454 SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRI 513
           SSSSGA+TV+FK+A LSL+VTPQITPDNR+++++ VT+D   + +    G    I    +
Sbjct: 589 SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKD-EPDYLNAVLG-VPPIKKNEV 646

Query: 514 GTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTP 573
             +VL+++GET+V+GG+F ++ +  VDKVP LGD+P LG LFRR      KSELL+F+TP
Sbjct: 647 NAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 706

Query: 574 KVV 576
           +++
Sbjct: 707 RIM 709