Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 685 a.a., type IV pilus biogenesis protein PilQ (RefSeq) from Shewanella amazonensis SB2B

 Score =  544 bits (1401), Expect = e-159
 Identities = 277/543 (51%), Positives = 399/543 (73%), Gaps = 9/543 (1%)

Query: 37  SAESATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLY 96
           S+ SA  N ++NIDFR N +    LIV+L +     +V+++   L ++   TD+  D LY
Sbjct: 149 SSSSAYVNGIKNIDFRRNGKGGGELIVQLNNTKVAANVEQIGAKLEVKFFNTDIPKDMLY 208

Query: 97  LLDVKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPK 156
           ++DV+DF+TPV+S E F+++  T++ V + GE++++Y  +    ++ ++K+      K +
Sbjct: 209 VMDVQDFATPVKSFETFKEDLVTRIQVDIGGEYEYNYVQEASQFKLSMNKVVRQASVKQE 268

Query: 157 SVLEKEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDII 216
              +  GK +S+NFQ+I VR VLQLIADYN FNLV SDSV G++TL LD VPW Q LD+I
Sbjct: 269 K--KYNGKTLSLNFQNISVRTVLQLIADYNNFNLVTSDSVQGDITLVLDDVPWDQALDLI 326

Query: 217 LQVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAA 276
           L+ KGLDKR++GN++++AP EEL +RE   L   +  +EL  L SE ++IN+AKA+DIA 
Sbjct: 327 LKTKGLDKRIEGNILMVAPAEELAVRESMELRNQQEVQELAPLYSEYMQINYAKATDIAE 386

Query: 277 MIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVT 336
           ++  EG+ ++LS+RGS+++DERTN+LL+++  + +  ++ +IE LDIP++QV IE+R+VT
Sbjct: 387 LLKSEGS-SLLSDRGSVAVDERTNTLLVKDTAETLVNVQRMIEVLDIPIRQVLIESRMVT 445

Query: 337 VKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFP-VDEFLNVNLASTSAN 395
           VK+   E+LG+RWGV    G+    GS+E        +A    P + + LNVNL + + N
Sbjct: 446 VKDNVAEDLGIRWGVTDQQGTKGTSGSLEG----AESIAGGVIPAISDRLNVNLPAPT-N 500

Query: 396 ASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESS 455
           A+SIAF VAKL  GT+LD+ELSAL+ E+K EII+SPR+ T+N++ AYIEQG EIPY+ +S
Sbjct: 501 AASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVSAS 560

Query: 456 SSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGT 515
           SSG++TV FKKAVLSL+VTPQITPDNR++LDL +TQD RGETV T TG AV+IDTQRIGT
Sbjct: 561 SSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETVDTATGRAVAIDTQRIGT 620

Query: 516 QVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKV 575
           QVLV+NGET+VLGGI+Q ++ + V KVP+LGD+P++G LFR T ++  + ELLIFVTPK+
Sbjct: 621 QVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKI 680

Query: 576 VIQ 578
           V +
Sbjct: 681 VTE 683