Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  141 bits (355), Expect = 1e-37
 Identities = 115/393 (29%), Positives = 196/393 (49%), Gaps = 50/393 (12%)

Query: 223 DKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGG-- 280
           D+R+  N ++I+  E+   R  + +++   AE+     +++  + +AKA D+  ++ G  
Sbjct: 238 DERI--NAVVISGDEKSRQRVVELVKRLD-AEQASTGNTKVRYLRYAKAEDLVEVLTGFA 294

Query: 281 --------EGNVNMLSERGS---ISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQ 329
                    G      +R S   I     TN+L+I   PD +  +  +I  LDI   QV 
Sbjct: 295 QKLEESKDNGAQQASGKRRSQINIMAHTDTNALVISAEPDQMRTLESVINQLDIRRAQVL 354

Query: 330 IEARIVTVKEGNLEELGVRWGVMSTNGS--HSVG---GSIESNLWQ-KGLLADDEFPVDE 383
           +EA IV V EG+    GV+W   S  G+  +++G   G I + +WQ +G  A +   +D 
Sbjct: 355 VEAIIVEVAEGDDVGFGVQWATESGGGTQFNNLGPTIGEIGAGIWQARGEEASEVTTIDG 414

Query: 384 FLN-------------VNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISS 430
             N               LA      + +A+ VA    G L+     A+ +++ + ++++
Sbjct: 415 NGNPIVSKNPEKRGDITLLAQALGKVNGMAWGVAMGDFGALIQ----AVSSDTNSNVLAT 470

Query: 431 PRLITTNKQPAYIEQGTEIPYL---ESSSSGAS----TVAFKKAVLSLKVTPQITPDNRL 483
           P + T + Q A    G E+P L   ++SS+G S    TV  K+  + LKVTPQI   N  
Sbjct: 471 PSITTLDNQEAAFIVGDEVPVLTGAQNSSNGNSNPFQTVERKEVGVKLKVTPQINEGN-- 528

Query: 484 VLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVP 543
            + L++ Q+  G   KTG    V+  T+R+ T V+ ++G+ VVLGG+    +  SV KVP
Sbjct: 529 AVKLAIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVP 586

Query: 544 LLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           +LGD+P+LG LF+ +     K  L++F+ P ++
Sbjct: 587 ILGDIPLLGHLFKSSSSGKKKKNLMVFIKPTII 619