Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 707 a.a., general secretion pathway protein D (RefSeq) from Shewanella loihica PV-4

 Score =  134 bits (338), Expect = 9e-36
 Identities = 110/388 (28%), Positives = 184/388 (47%), Gaps = 55/388 (14%)

Query: 232 LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMI------------G 279
           +I   +E   +   AL K   AE+     +++  + +AKA D+  ++            G
Sbjct: 241 VIVSGDEKSRQRVVALIKKLDAEQATTGNTKVRYLRYAKAEDLVEVLTGFAEKLAKDQEG 300

Query: 280 GEGNVNMLSERGSISIDER--TNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTV 337
           G+        R  I+I     TN+L+I   PD +  +  +I  LDI   QV +EA IV V
Sbjct: 301 GQAQGGRSKRRNEINIMAHPDTNALVISAEPDQMRTLESVINQLDIRRAQVLVEAIIVEV 360

Query: 338 KEGNLEELGVRWGVMSTNGS--HSVG---GSIESNLWQKGLLADDEFPVDEFLNVN---- 388
            EG+    GV+W   +  G+  +++G   G I + +W     A DE   +          
Sbjct: 361 AEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGIW----AAQDEKASNSCTGSGDNLT 416

Query: 389 -------------LASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLIT 435
                        LA      + +A+ VA    G L    + A+ +++K+ ++++P + T
Sbjct: 417 CTDNPDKKGDITLLAQALGKVNGMAWGVAMGDFGAL----IQAVSSDTKSNVLATPSITT 472

Query: 436 TNKQPAYIEQGTEIPYL---ESSSSGAS----TVAFKKAVLSLKVTPQITPDNRLVLDLS 488
            + Q A    G E+P L   ++SS+G S    TV  K+  + LKV PQI  +    + L+
Sbjct: 473 LDNQEASFIVGDEVPVLTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQI--NEGTTVKLT 530

Query: 489 VTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDL 548
           + Q+  G   KTG    V+  T+R+ T V+ ++G+ VVLGG+    +  SV KVP LGD+
Sbjct: 531 IEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVPFLGDI 588

Query: 549 PVLGALFRRTYEQMGKSELLIFVTPKVV 576
           P+LG LF+ +     K  L++F+ P ++
Sbjct: 589 PILGHLFKSSSSGKKKKNLMVFIKPTII 616