Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 683 a.a., type IV pilus secretin PilQ (RefSeq) from Shewanella loihica PV-4

 Score =  547 bits (1410), Expect = e-160
 Identities = 278/540 (51%), Positives = 399/540 (73%), Gaps = 8/540 (1%)

Query: 38  AESATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLYL 97
           A +   N ++NIDF    +    L+V+L + S   +V++V   L ++L  TD+A D LY+
Sbjct: 147 AANPFVNGIKNIDFHRTGDGGGELLVKLNNSSVAANVEQVGAKLELKLYNTDIASDLLYV 206

Query: 98  LDVKDFSTPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKS 157
           +DV+DF+TPV+S E F+ E + +++V V G+++++Y  +G    + + K  A+     K 
Sbjct: 207 MDVQDFATPVKSFETFKDELTARVLVDVSGQYEYNYKQEGNLFRLNVRK--AERAAVVKE 264

Query: 158 VLEKEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIIL 217
             + EG+ +S+NFQ I VR VLQ+IADYN FNLV SD+V G++TLRLD VPW Q LD+IL
Sbjct: 265 EKKYEGRSLSLNFQSISVRTVLQIIADYNNFNLVTSDTVEGDITLRLDDVPWDQALDLIL 324

Query: 218 QVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAM 277
           Q KGLDKR++GN++++AP EE+ +RE Q L+  +  +EL  L SE ++IN+AKA+DIA +
Sbjct: 325 QTKGLDKRIEGNILMVAPAEEIAIRESQELKNQQEVKELAPLYSEYLQINYAKATDIAEL 384

Query: 278 IGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTV 337
           + G+ + ++LS RG++++D+RTN+LL+++  +++  I  ++E LDIP++QV IE+R+VTV
Sbjct: 385 LKGD-DASLLSARGTVAVDDRTNTLLVKDTEESLENIHRLVEVLDIPIRQVLIESRMVTV 443

Query: 338 KEGNLEELGVRWGVMSTNGSHSVGGSIE-SNLWQKGLLADDEFPVDEFLNVNLASTSANA 396
           K+   E+LG++WG+    GS    GS+E +N    G++ D    + + LNVNL +  AN 
Sbjct: 444 KDDVSEDLGIKWGITDQQGSKGTSGSLEGANDIANGVVPD----IGDRLNVNLPAAVANP 499

Query: 397 SSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSS 456
           +SIAF VAKL  GTLLDLELSAL+ ESK EII+SPR+ T+N++ AYIEQG EIPY+ES+S
Sbjct: 500 TSIAFHVAKLADGTLLDLELSALEQESKGEIIASPRITTSNQKAAYIEQGVEIPYVESAS 559

Query: 457 SGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQ 516
           SGA+TV FKKAVLSL+VTPQITPDNR++LDL +TQD +G+TV T  G+AVSIDTQRIGTQ
Sbjct: 560 SGAATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPLGQAVSIDTQRIGTQ 619

Query: 517 VLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           VLV++GET+VLGGI+Q  + N V KVP+LGD+P LG LFR T ++  + ELLIFVTPK++
Sbjct: 620 VLVDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFRNTTDKNERQELLIFVTPKII 679