Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., type II and III secretion system protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  172 bits (435), Expect = 4e-47
 Identities = 124/446 (27%), Positives = 218/446 (48%), Gaps = 50/446 (11%)

Query: 166 ISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKR 225
           +++   ++ V   L+ +A   G N+++S  V G++ + ++ VPW  V   +L   GLD  
Sbjct: 87  VTLKLHNVDVGVALRSLAAAAGKNIILSPGVKGSVNVNVNRVPWSDVFKGMLDSNGLDYA 146

Query: 226 VDGNVILIAPKEELDLR-EKQALEKARLAEEL-----GDLKSEIIKINFAKASDIAAMIG 279
             G +I +    +  +  E   LE  R+A++L     G + + ++ + +A+A+++   + 
Sbjct: 147 WQGELIKVITMADKKVELEHATLENQRMAQKLKGRKVGPMVTTVLDVRYAEAAELKKNLE 206

Query: 280 GEGNVNMLSER------GSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEAR 333
           G      LS+       GS+ +D  TNSL+I+ + D+   +  ++ +LD P  Q+Q++A 
Sbjct: 207 G-----FLSKDDGGKPVGSVVVDTFTNSLIIQAVEDDQKKLMTLVSNLDKPRAQIQLKAH 261

Query: 334 IVTVKEGNLEELGVRWGVMS--------------------TNGSHSVGGSIESNLWQKGL 373
           IV   +    ELG++WG ++                    T G+    GS        G+
Sbjct: 262 IVEATKETARELGIQWGGVNRVGNMAGSNDLWVTPGGTGGTAGTSPYNGSYTPIFGAPGI 321

Query: 374 LADDE---FPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISS 430
                   FP+D        +  + A S+      +G G +L+++LSALQ  SK  I+SS
Sbjct: 322 SGQGNGINFPID-------TTGKSGAGSLGLMFGTIG-GNMLEMQLSALQESSKINILSS 373

Query: 431 PRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVT 490
           P + T + Q AY E G ++PY+ +++ G   V F+ AVL L++TP +  D  L L + V 
Sbjct: 374 PSISTLDNQMAYTENGEKVPYVSTNAQGDREVKFEDAVLRLEITPHVIDDKNLKLKVLVK 433

Query: 491 QDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPV 550
           +D   +  +T  G    I  Q   T ++V +GET+V+ G+ +   +     VP L D+  
Sbjct: 434 KD-EVDLTRTVEGNPFIIKKQ-TETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVEG 491

Query: 551 LGALFRRTYEQMGKSELLIFVTPKVV 576
           LG LF    +     E+LIF+TP V+
Sbjct: 492 LGWLFGSDSKASKLEEVLIFITPAVL 517