Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., type IV pilus biogenesis protein PilQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  540 bits (1392), Expect = e-158
 Identities = 275/534 (51%), Positives = 394/534 (73%), Gaps = 8/534 (1%)

Query: 44  NQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLYLLDVKDF 103
           N ++NIDFR N      L+V L + S   +V+++   L ++L  TD+ +D LY++DV+DF
Sbjct: 154 NSVKNIDFRRNSNGGGDLLVYLNNRSVAANVEQIGAKLEVQLYNTDINNDLLYVMDVQDF 213

Query: 104 STPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKEG 163
           STPV++ E F+ + + +++V V G ++ ++  +      ++S  K +     K + +  G
Sbjct: 214 STPVKNFETFKDDLTARILVDVTGNYEFNFKQEDNLF--ILSINKVERVVATKDIKKYNG 271

Query: 164 KLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLD 223
           K +S+NFQ+I VR VLQ+IADYN FNLV SDSV G++TLRLD VPW Q LD+ILQ KGLD
Sbjct: 272 KTLSLNFQNISVRTVLQIIADYNNFNLVTSDSVEGDITLRLDDVPWDQALDLILQTKGLD 331

Query: 224 KRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGN 283
           KR++GN++++AP EEL +RE Q L+  +  +EL  L SE ++IN+AKA+DIA ++ G  +
Sbjct: 332 KRIEGNILMVAPSEELAIRESQNLKNKQEVKELAPLYSEYLQINYAKATDIAELLKGADS 391

Query: 284 VNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLE 343
            ++LS RGS+++DERTN++L+++  + I  I  ++E LDIP++QV IE+R+VTVK+   E
Sbjct: 392 -SLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIRQVLIESRMVTVKDDVSE 450

Query: 344 ELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFP-VDEFLNVNLASTSANASSIAFQ 402
           +LG+RWGV    G+    GS+E      G +A+ + P +D  LNVNL +   N +SIAF 
Sbjct: 451 DLGIRWGVTDQQGNKGTSGSLEG----AGDIANGKVPSLDNRLNVNLPAAVTNPTSIAFH 506

Query: 403 VAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTV 462
           VAKL  GT+LDLELSAL+ E+K EII+SPR+ T+N++ AYIEQG EIPY++S+SSGA++V
Sbjct: 507 VAKLADGTILDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVQSTSSGATSV 566

Query: 463 AFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNG 522
            FKKAVLSL+VTPQITPDNR++LDL +TQD +G+TV T TG AV+IDTQRIGTQVLV+NG
Sbjct: 567 TFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLVDNG 626

Query: 523 ETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           ET+VLGGI+Q ++ + V KVP+LGD+P++G LFR T ++  + ELLIFVTPK+V
Sbjct: 627 ETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680