Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., type III secretion system protein, YscC family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 99.4 bits (246), Expect = 4e-25
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 21/292 (7%)

Query: 292 SISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGV 351
           SI  D R N++++ +    +     +I  LD PV+ V+I A IV +      +LGV +  
Sbjct: 259 SIMADPRVNAVIVHDAVYRMPYYESVIGDLDRPVELVEIHAAIVDIDTNFKRDLGVTYQA 318

Query: 352 MSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTL 411
                    GG            AD     D+F  + +      +      +  +GS   
Sbjct: 319 TVGKDQRWAGG------------ADVSTGTDKFTPLPVPGVPQGSGLTLSTIYTMGSDYF 366

Query: 412 LDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSL 471
           L   ++AL+   +A ++  P ++T +   A +E  T   Y++     A  +   +A   L
Sbjct: 367 L-ARINALEKNGEARMLGRPSVLTVDNVQATLEN-TSTYYIQVQGYQAVDLFKVEAGTVL 424

Query: 472 KVTPQITPDN----RLVLDLSVTQDRRGETVKTGTGEAVSIDT---QRIGTQVLVNNGET 524
           +VTP I  ++     + L +SV  D+  +T  T T    +I      +I TQ ++  G++
Sbjct: 425 RVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIPPIKQTKINTQAIIGAGQS 484

Query: 525 VVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           +++GG +      S D VP+L ++PVLG LF+   ++  + E LI +TPKVV
Sbjct: 485 LLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVV 536