Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., bacterial type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  167 bits (424), Expect = 7e-46
 Identities = 119/462 (25%), Positives = 229/462 (49%), Gaps = 39/462 (8%)

Query: 141 EVVISKLKADEKPKPKSVLEKEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNL 200
           E V +K +  ++P P+         +++   ++ V   L+ +A     +++VS  V G  
Sbjct: 67  EEVTAKQEEQKRPLPQMP-------VTLKLHNVDVGVALRSLAAAANTSIIVSPGVKGTA 119

Query: 201 TLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLR-EKQALEKARLAEEL--- 256
           ++ ++ VPW+ V   IL    LD    G +I +    +     E++ LE  R+A++L   
Sbjct: 120 SINVNRVPWEDVFKGILASNALDFAWRGELIQVMTLADKKAEVERELLETQRMAQQLKGR 179

Query: 257 --GDLKSEIIKINFAKASDIAAMIGGEGNVNMLSER-GSISIDERTNSLLIRELPDNIAV 313
             G L + +I++ +A+A+++   + G  + +  ++  G++ +D  TNSL+++ + D+++ 
Sbjct: 180 KVGPLVTSVIEVRYAEAAELKKNLEGFLSKDEQNKPVGAVVVDTHTNSLIVQAVEDDLSK 239

Query: 314 IREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 373
           I  ++ +LD P  Q+ ++A IV        +LG++WG +  +G+   G    + +W    
Sbjct: 240 IITLVNNLDKPRAQILLKAHIVEATRDTARDLGIQWGGVGRSGNMGDG----NRMWVTPG 295

Query: 374 LADDEFPVDEFLNVNL-----ASTSANASSIAFQVAKLGS--------------GTLLDL 414
            +    P D      +        S     + F V K G               G +L++
Sbjct: 296 GSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEV 355

Query: 415 ELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVT 474
           +LSALQ+  K  I+SSP + T + Q A+ E G ++PY+ +++ G   V F+ AVL L++T
Sbjct: 356 QLSALQDNGKLNILSSPSISTLDNQMAFTENGEKVPYVSTNAQGDREVKFEDAVLRLEIT 415

Query: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534
           P +  ++ L L + V +D   +  +T  G    I  Q   T ++V +GETVV+ G+ +  
Sbjct: 416 PHVIDESNLKLKVQVKKD-EVDLTRTVEGNPFIIKKQ-TETTLIVQDGETVVISGLTKER 473

Query: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
            +     +P L D+  +GALF    +     ++LIF+TP ++
Sbjct: 474 SSTRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFITPAIL 515