Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., type II secretion system secretin GspD from Ralstonia sp. UNC404CL21Col

 Score =  115 bits (288), Expect = 7e-30
 Identities = 94/315 (29%), Positives = 145/315 (46%), Gaps = 25/315 (7%)

Query: 282 GNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGN 341
           G  N  +  G I  D  TN+L+I         +R +I+ LD    QV IE+ IV V    
Sbjct: 389 GQNNTPTTGGIIQADPATNALIITASEPVYRNLRAVIDDLDARRAQVYIESMIVEVTATK 448

Query: 342 LEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAF 401
             +LG++W V        +GG         G L      +    +  +  T+A  +  + 
Sbjct: 449 ASQLGIQWLVGGGGPGTFIGGGTNYGTGS-GNLISLAGTIAAIGSGGIGGTAAQTALTSL 507

Query: 402 QVAKLGSGTL--------LDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE 453
            V +L  G          L + LSAL ++    ++S+P LIT + + A I  G  +P   
Sbjct: 508 NVGQLNGGNFGVFNRGSGLGVLLSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITT 567

Query: 454 SSSSGASTVAF---------KKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGE 504
            S +   T A          K   ++L+V PQIT D  LV  + + Q+     V  GT  
Sbjct: 568 GSYAQTGTSASVSPFQTFDRKDVGITLRVKPQIT-DGGLV-KMQIFQE--SSAVVPGTQN 623

Query: 505 AV---SIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQ 561
           A    + + + I T VL N+G+ VVLGG+ + +  +   KVP LGD+P+LGALFR   + 
Sbjct: 624 ATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGDIPILGALFRSENKT 683

Query: 562 MGKSELLIFVTPKVV 576
             K+ LL+F+ P ++
Sbjct: 684 RVKTNLLVFLRPIIL 698



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 163 GKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDG-VPWQQVLDI---ILQ 218
           G  +S+NF +  + +V++ +    G N +V   V G + L  +  V   Q L+    IL+
Sbjct: 51  GDEVSLNFVNADLDSVVKAVGQATGKNFIVDPRVKGTVNLVTEKPVTRSQALESLGSILR 110

Query: 219 VKGLDKRVDGNVIL-IAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAM 277
           ++G    V+GN    + P+ +  L+       A  A     + +++ ++    A+++  +
Sbjct: 111 MQGY-AIVEGNGFTKVVPEADAKLQGSPTSVGAAGARGGEQVVTQVFRLQHESANNLVPV 169

Query: 278 IGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPV 325
           +       M++   +I+     N+L+I +  DN+  I  II S+D PV
Sbjct: 170 LRP-----MIAPNNTITAYPANNTLVITDYADNLRRIGRIIASIDTPV 212