Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., type IV pilus secretin PilQ (RefSeq) from Shewanella sp. ANA-3

 Score =  543 bits (1399), Expect = e-159
 Identities = 277/534 (51%), Positives = 393/534 (73%), Gaps = 8/534 (1%)

Query: 44  NQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLKTDVADDKLYLLDVKDF 103
           N ++NIDFR N      L+V L + S   +V+++   L ++L  TD+  D LY++DV+DF
Sbjct: 154 NSVKNIDFRRNANGGGDLLVYLNNRSVAANVEQIGAKLEVQLYNTDINSDLLYVMDVQDF 213

Query: 104 STPVESVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKEG 163
           STPV+  E F+ + +T+++V V G ++ +Y  +     + I+K+  +     K V +  G
Sbjct: 214 STPVKHFETFKDDLTTRILVDVSGNYEFNYKQEDNLFRLSINKV--ERAAATKEVKKYNG 271

Query: 164 KLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLD 223
           K +S+NFQ+I VR VLQ+IADYN FNLV SD+V G++TLRLD VPW Q LD+ILQ KGLD
Sbjct: 272 KTLSLNFQNISVRTVLQIIADYNNFNLVTSDTVEGDITLRLDDVPWDQALDLILQTKGLD 331

Query: 224 KRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGN 283
           KR++GN++++AP EEL +RE Q L+  +  +EL  L SE ++IN+AKA+DIA ++ G  +
Sbjct: 332 KRIEGNILMVAPSEELAIRESQNLKNKQEVKELAPLYSEYLQINYAKATDIAELLKGADS 391

Query: 284 VNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLE 343
            ++LS RGS+++DERTN++L+++  + I  I  ++E LDIP++QV IE+R+VTVK+   E
Sbjct: 392 -SLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIRQVLIESRMVTVKDDVSE 450

Query: 344 ELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFP-VDEFLNVNLASTSANASSIAFQ 402
           +LG+RWGV    GS    G++E      G +A+   P +D  LNVNL +   N +SIAF 
Sbjct: 451 DLGIRWGVTDQQGSKGTSGTLEG----AGSIANGVVPSLDNRLNVNLPAAVTNPTSIAFH 506

Query: 403 VAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTV 462
           VAKL  GT+LDLELSAL+ E+K EII+SPR+ T+N++ AYIEQG EIPY++S+SSGA++V
Sbjct: 507 VAKLADGTILDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVQSTSSGATSV 566

Query: 463 AFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNG 522
            FKKAVLSL+VTPQITPDNR++LDL +TQD +G+TV T TG AV+IDTQRIGTQVLV+NG
Sbjct: 567 TFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLVDNG 626

Query: 523 ETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           ET+VLGGI+Q ++ + V KVP+LGD+P++G LFR T ++  + ELLIFVTPK+V
Sbjct: 627 ETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680