Pairwise Alignments

Query, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., general secretion pathway protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  141 bits (356), Expect = 8e-38
 Identities = 111/390 (28%), Positives = 193/390 (49%), Gaps = 48/390 (12%)

Query: 223 DKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGG-- 280
           D+R+  N ++++  E+   R  + + +   AE+     +++  + +AKA D+  ++ G  
Sbjct: 235 DERI--NAVVVSGDEKSRQRVVELIHRLD-AEQASTGNTKVRYLRYAKAEDLVEVLTGFA 291

Query: 281 ---EGNVNMLSERG-------SISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQI 330
              EG  +  ++ G       +I     TN+L+I   PD +  I  +I  LDI   QV +
Sbjct: 292 QKLEGEKDPSAQAGGKRRNEINIMAHTDTNALVISAEPDQMRTIESVINQLDIRRAQVLV 351

Query: 331 EARIVTVKEGNLEELGVRWGVMSTNGS--HSVG---GSIESNLWQ----KGLLADDEFPV 381
           EA IV V EG+    GV+W   +  G+  +++G   G I + +WQ    +G    +    
Sbjct: 352 EAIIVEVAEGDNVGFGVQWAAKADGGTQFNNLGPTIGEIGAGIWQAQDKEGTYITNP-ST 410

Query: 382 DEFLNVN---------LASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPR 432
            E +  N         LA      + +A+ VA    G L+     A+  ++ + ++++P 
Sbjct: 411 GEVIGKNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQ----AVSADTNSNVLATPS 466

Query: 433 LITTNKQPAYIEQGTEIPYLESSSSGAS------TVAFKKAVLSLKVTPQITPDNRLVLD 486
           + T + Q A    G E+P L  S++ ++      TV  K+  + LKV PQI   N   + 
Sbjct: 467 ITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVVPQINEGN--AVK 524

Query: 487 LSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLG 546
           L++ Q+  G  V   TG  +S  T+R+ T V+ ++G+ VVLGG+    +  SV KVP LG
Sbjct: 525 LAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVPFLG 582

Query: 547 DLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
           D+PVLG LF+ +  +  K  L+IF+ P ++
Sbjct: 583 DIPVLGHLFKSSSSKKTKKNLMIFIKPTII 612