Pairwise Alignments

Query, 869 a.a., nuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 947 a.a., endonuclease/exonuclease/phosphatase (RefSeq) from Shewanella amazonensis SB2B

 Score =  356 bits (914), Expect = e-102
 Identities = 299/871 (34%), Positives = 422/871 (48%), Gaps = 129/871 (14%)

Query: 12  STLALAISFGLVAPSYA--DLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQLAMSTNGS 69
           S +ALA++ G+ A  +A  +L+IS+YVEGSS NKAIE+ N +   V L+ YQL    NG+
Sbjct: 6   SLVALALA-GVSANVFAADNLVISEYVEGSSNNKAIELYNPTAAAVDLSQYQLKFYFNGN 64

Query: 70  GTWDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIALLNSDGSV 129
            T    + L G ++A+    V+A   A++ IL    L +N    FNG+D I L +  GSV
Sbjct: 65  STAGSNIALSG-ILASGATFVVADNDASADILNRTQLASNASF-FNGDDAIVLEHL-GSV 121

Query: 130 HDVVGSMG---------GADFAKDNTLAR------TTLTPSATYQASDWATQGKDNIDGL 174
            D +G +G         G     DNTL R          P      S+W    +D+   L
Sbjct: 122 IDSLGQIGVDPGSQWGSGLLSTADNTLRRDGANLVADTDPYDAVTLSNWIGFAQDDFSNL 181

Query: 175 GAL-----DTTTPPSAFNCTLDG--AEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVK 227
           G       D T P    +   +G     S T I  IQG G+TSP +        +   V+
Sbjct: 182 GQFSSGPTDPTDPTDPTDPPAEGMVCGTSATAIHSIQGAGTTSPMV-------GQIVEVE 234

Query: 228 GVVSAVTTGLTKGFYLQ--SLEDDYNPNTSEGLFVFTNQSSSDLAPGDVVCVKGKVQEYY 285
            VV +      KG +LQ    E D +  TSEG+F++T  + +    GD V VK KV EY 
Sbjct: 235 AVVVSNQEAGLKGLFLQMADAEQDSDVQTSEGVFLYTGNAPTGYLVGDRVRVKAKVVEYQ 294

Query: 286 NLTQLKAENNQWVKQGQQAAPQAQAIEILPSDEHFAQTLERYEGMLVKTTPELDMRVTRT 345
            LT+L    ++ +    Q  P A A+ +  +D      LE +EGMLV  +  L +     
Sbjct: 295 GLTELTNLTDKTLCATAQPLPTAAALSLPVND---VTELEAFEGMLVNFSQNLVVNEVYN 351

Query: 346 FGYDYASRRNNMVLAQGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPDGQIP 405
            G      R   ++  GR ++   Q    G++ A      N +  + ++    + +    
Sbjct: 352 LG------RYGEIMLGGRRHVIGTQVAAPGAD-ALAVTAANQRDSILLDDGLTSQNPDPV 404

Query: 406 YYPTFGRTDVDQDGSTEDYIRIDDTVSGLEGVVSYSYNEYRLIVTNTISAENLVHNAPRQ 465
            YP  G        S  + +R+ DTV+ L  V+ Y +  YRL+  +T+   N V + PR 
Sbjct: 405 IYPAPGL-------SATNTVRVGDTVTNLTAVMHYGFGVYRLMPLDTV---NFVASNPRT 454

Query: 466 AKPDLDEGDLRIATFNVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDA 525
             P LD G+L++A+FNVLNYFN    G        RGAN   EFE Q+AKI++A+  +DA
Sbjct: 455 DAPALDAGNLKVASFNVLNYFNGD--GLGGGFPTARGANTAVEFERQRAKIISAMKAIDA 512

Query: 526 DIVGLMEIENNGFGEGSAIAQLVNQINSQIADKKKHYRFVAIDSNGDGKTDAADSLGTDV 585
           DI+GLMEIEN+GFG  SAIA LVN +N+  A +   Y ++           A  ++GTD 
Sbjct: 513 DILGLMEIENDGFGSESAIADLVNGLNA--ATEAGRYGYI---------DPAVPAIGTDA 561

Query: 586 ITTGVIYR-DKVVKLAQNRVIPMPSQQAPEVVDANGKVI-EDGKNYQRDTLAPTFKVKGG 643
           I+ G+IYR DKV       ++      +   VD +GKV+  D KN  R  LA  F+    
Sbjct: 562 ISVGIIYRTDKVTPEGAAAIL----DSSNSAVDEDGKVLFNDQKN--RPMLAQAFRHLET 615

Query: 644 NEKITVAVNHFKSKGSACWEDAAPVEQGGQAGKDL-DYQGACENFRVAAAVALGDALAK- 701
           +E + VAVNHFKSKGS C  +  P         DL D QG C   R  AA A+G+ L   
Sbjct: 616 DEPVVVAVNHFKSKGSDCVAENDP---------DLGDGQGNCNLTRTRAAKAVGEFLNTE 666

Query: 702 -IDGHKVILGDMNSYGMEDPMLVLTDYTPEKYGKTIRAARNTYIAGL-EQFGDAGAEIKH 759
             D   +++GD+NSY ME+P+  L +                  AGL E F   G E   
Sbjct: 667 FADAPVLVIGDLNSYAMENPLTALNE------------------AGLTELFAHLGKE--- 705

Query: 760 SYGYLNAVAMKHPDSWSYSFNDEVGALDHLLVSPSLKHKVVDATDWHINGAESTLFDYND 819
                         ++SY F+ E G LDH L + +L  KVVD T+WHIN  E  + DYN 
Sbjct: 706 -------------SAYSYVFSGESGQLDHALANVALLEKVVDVTEWHINTDEPRILDYNV 752

Query: 820 EFK--GNLPKY--KDQFRASDHDPAVLELNI 846
           EFK  G +      D +R+SDHDP V+ L +
Sbjct: 753 EFKSAGQVESLYSMDAYRSSDHDPVVISLEL 783