Pairwise Alignments

Query, 869 a.a., nuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 871 a.a., endonuclease/exonuclease/phosphatase (RefSeq) from Shewanella loihica PV-4

 Score =  587 bits (1514), Expect = e-172
 Identities = 367/890 (41%), Positives = 514/890 (57%), Gaps = 60/890 (6%)

Query: 12  STLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQLAMSTNGSGT 71
           S LAL+I+  L   + ADLLIS+YVEG+S NKAIE+ N+ D  + L GY+L    +G   
Sbjct: 8   SVLALSIAAALPVSAKADLLISEYVEGNSNNKAIELYNSGDAALDLTGYKLVRYKDGDTN 67

Query: 72  WDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIALLNSDGSVHD 131
               + LDG  I A+ + VI H SA  A+ +  D +   +  FNG D +AL+  DG+V D
Sbjct: 68  ALDMVALDGLTIDAKKLKVILHPSAEIALDSDVDSSTGNLY-FNGGDAVALVK-DGAVVD 125

Query: 132 VVGSMGG-ADFAKDNTLARTT--LTPSATYQASDWATQGKDNIDGLGALDTTTPPS---- 184
           ++G++   + +  + T+ R T  L  S  +  S W     D   GLG LD  + P+    
Sbjct: 126 IIGAVPTPSGWGMNVTMQRNTDALVASNVFVESQWKVLPVDTFTGLGNLDGASAPTEPEA 185

Query: 185 -AFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGLTKGFYL 243
            AF CT  GA+   T I  +QG G +SP I    Y + E+  ++GVV+A    L KGFYL
Sbjct: 186 PAFTCT--GAK--ITPIYSVQGAGKSSPLIADGEYASKEEVTIRGVVTARGDSLFKGFYL 241

Query: 244 QSLEDDYNPNTSEGLFVFTNQSSSD-LAPGDVVCVKGKVQEYYNLTQLKAENNQWVKQGQ 302
           Q +E D +P TS+G+FVF  +++ + + PG  VCV+G V+EYY LTQ+  + ++ ++ G+
Sbjct: 242 QEVEGDNSPYTSDGIFVFLGEAAGEEIQPGVEVCVQGLVKEYYGLTQVDIKADKKIEVGE 301

Query: 303 QA-APQAQAIEILPSDEHFAQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNNMVLAQ 361
              AP AQ   +    E     LER+EGM V      DM+V+RTF YDYA+RRNNM+L+ 
Sbjct: 302 NVGAPAAQPFYVADG-ESLGDALERFEGMHVVLDAGSDMKVSRTFSYDYAARRNNMMLSH 360

Query: 362 GRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPDGQIPYYPTFGRTDVDQDGST 421
               M+  Q +PA S++A   +  N   +LF+ESD KA DG++PY+PTF         + 
Sbjct: 361 KAPLMKATQLYPAMSDEAIALEAQNRANQLFIESDYKAKDGEVPYFPTF--------NAE 412

Query: 422 EDYIRIDDTVSGLEGVVSYSYNEYRLIVTNTISAENLVHNAPRQAKPDL-DEGDLRIATF 480
             YIR+ D ++ L+GVVSYSYNEYRL+ TN I A + +    R   P +  +GD+R+A+F
Sbjct: 413 NGYIRVGDQLTNLQGVVSYSYNEYRLVATNEIVAGDFIRGDDRSDAPAIATKGDIRVASF 472

Query: 481 NVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIENNGFGE 540
           NVLN+FN+  GGD +   DNRGAN   E  +Q+ KIVNAI  ++ADIVGLMEI NNGFGE
Sbjct: 473 NVLNFFNNAVGGD-DTPADNRGANTEEEMLLQRTKIVNAITAMNADIVGLMEIGNNGFGE 531

Query: 541 GSAIAQLVNQINSQIADKKKHYRFVAIDSNGDGKTDAADSLGTDVITTGVIYR-DKVVKL 599
            SAI  L++ +N++++D    Y FV I+   D        +G+D IT G++YR  KV   
Sbjct: 532 KSAIQNLLDALNAELSDADA-YSFVEIN---DADKYQGKFVGSDAITVGMLYRAAKVTPS 587

Query: 600 AQNRVIPMPSQQAPEVVDANG-----KVIEDGKNYQRDTLAPTFKVKGGNEKITVAVNHF 654
               +I  P Q A   V   G     ++      YQR +L  TFK+   +E++TV VNH 
Sbjct: 588 GDAFLIATPEQHATAGVVTRGEGDKAELSPAFDKYQRHSLGQTFKIH--DEQLTVVVNHL 645

Query: 655 KSKGSACWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKIDGHKVILGDMNS 714
           KSKGS C ED A  E         D QG C  FRV+AA  +GDAL  + G  +++GDMN+
Sbjct: 646 KSKGSGCVEDWANYEDNSDPA---DLQGKCNEFRVSAAKVIGDALQDVKGDLLVIGDMNA 702

Query: 715 YGMEDPMLVLTDYTPEKYGKTIRAARNTYIAGLEQFGDAGAEIKHSYGYLNAVAMKH-PD 773
           YG EDP+ VLTD+      + I  A  T + G + +   G++I+  YG +N     H PD
Sbjct: 703 YGKEDPIRVLTDFDAANSDRDIMTASWTTLDG-KVYEREGSKIEKGYGLINLNTKVHGPD 761

Query: 774 SWSYSFNDEVGALDHLLVSPSLKHKVVDATDWHINGAESTLFDYNDEFKGNLPKYKDQFR 833
           ++SYS+N E+G LDH L + SL  +V+D  DWHIN  ES LF+Y  ++ G L K ++ F 
Sbjct: 762 TYSYSYNGELGNLDHALANTSLAERVLDIQDWHINAVESNLFEYGSKYTGELAKSENAFS 821

Query: 834 ASDHDPAVLELNI---------------YGGSLGLGALLGLLGLGVWRRR 868
           ASDHDP ++ L+                 GGSLG   L+ LLGL   RRR
Sbjct: 822 ASDHDPVIVALSYPVPKPEPKPEPEEKDDGGSLGYLGLM-LLGLAGLRRR 870