Pairwise Alignments

Query, 869 a.a., nuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 945 a.a., endonuclease/exonuclease/phosphatase (RefSeq) from Shewanella loihica PV-4

 Score =  341 bits (874), Expect = 1e-97
 Identities = 292/873 (33%), Positives = 423/873 (48%), Gaps = 137/873 (15%)

Query: 12  STLALAIS-FGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQLAMSTNGSG 70
           S LALAI      A +  DL+IS+YVEGSS NKA+E  N +   + L+ YQL    NGS 
Sbjct: 6   SALALAIGGVSTFAQAADDLIISEYVEGSSNNKAVEFYNPTGAAIDLSQYQLEFYFNGST 65

Query: 71  TWDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIALLNSDGSVH 130
           +   T+ L G  +AA    V+A   A + ILA AD  + T   FNG+D + +L   G V 
Sbjct: 66  SAGSTIALTGS-LAAGKTYVLADNDAAAEILAVADQLS-TASFFNGDDTL-VLRKQGQVI 122

Query: 131 DVVGSMG---GADFA------KDNTLARTTLTPSATYQASD------WATQGKDNIDGLG 175
           D +G +G   G+++       ++NTL R      A  Q  D      W    +D+   LG
Sbjct: 123 DSLGQLGTDPGSEWGSGDLSTQNNTLRRDPNQLIADTQLDDAVTLATWTGHAQDDFSDLG 182

Query: 176 AL------------DTTTPPSAFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNED 223
                         D T PP    C     +P+ T I ++QG G  SP       +  + 
Sbjct: 183 QFAGQGPTDPTDPTDPTEPPVGLVCH----DPA-TKISELQGSGDISP-------LNGQS 230

Query: 224 FFVKGVVSAVTTGLTKGFYLQ--SLEDDYNPNTSEGLFVFTNQSSSDLAPGDVVCVKGKV 281
             V+ +V++      KG +LQ    E D + NTSEG+FV+T  S    A GD V +   V
Sbjct: 231 VMVEAIVTSNQEAGLKGLFLQMADAEADADINTSEGVFVYTGGSLGYQA-GDRVRLTAMV 289

Query: 282 QEYYNLTQLKAENNQWVKQGQQAAPQAQAIEILPSDEHFAQTLERYEGMLVKTTPELDMR 341
           +EY  LT+L   +   +    QA P A  +  LP  +  +  LE  EGM V  T  L + 
Sbjct: 290 KEYNGLTELTNVSEHALCDSAQALPSAAEVS-LPLAQ--SSDLEAVEGMRVHFTQNLVVN 346

Query: 342 VTRTFGYDYASRRNNMVLAQGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPD 401
                G      R   +L   + +    Q    GSE  +  +  NA   + ++    + +
Sbjct: 347 EVYNLG------RYGEILLGSKRHFIGTQVAEPGSEALAVSQA-NALDSVLLDDGLTSQN 399

Query: 402 GQIPYYPTFGRTDVDQDGSTEDYIRIDDTVSGLEGVVSYSYNEYRLIVTNTISAENLVHN 461
                YP  G        S ++ +R+ D+++ L  V+ Y + +YRL+  +T+   N V  
Sbjct: 400 PDPVRYPAPGL-------SADNTVRVGDSITELHAVMHYGFGKYRLMPIDTV---NFVAT 449

Query: 462 APRQAKPDLDEG-DLRIATFNVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAI 520
            PR ++P L  G +L++A+FNVLNYFN    G       +RGA+  +EF  Q+AKI++A+
Sbjct: 450 NPRSSEPALAAGGNLKVASFNVLNYFNGD--GLGGGFPTDRGADTPSEFARQRAKIISAM 507

Query: 521 VRLDADIVGLMEIENNGFGEGSAIAQLVNQINSQIADKKKHYRFVAIDSNGDGKTDAADS 580
           V +DADI GLMEIEN+GFG  SAI  LV+ +N  + + +  Y+F++  +          +
Sbjct: 508 VSIDADIFGLMEIENDGFGTESAINDLVSGLNQAVGEAR--YQFISAPT---------PT 556

Query: 581 LGTDVITTGVIYR-DKVVKLAQNRVIPMPSQQAPEVVDANGKVI-EDGKNYQRDTLAPTF 638
           +GTD IT G++YR D+V  +   +V+      A   +D  G+V+  DGKN  R +L   F
Sbjct: 557 IGTDAITVGMLYRSDRVRPVGAAKVL----SSANSPLDEQGEVLFNDGKN--RPSLTQAF 610

Query: 639 KVKGGNEKITVAVNHFKSKGSACWEDAAPVEQGGQAGKDL-DYQGACENFRVAAAVALGD 697
           +V   ++++ VAVNH KSKGS C     P         DL D QG C   R  AA ALG 
Sbjct: 611 EVLVEDQQLVVAVNHLKSKGSDCVSLGDP---------DLNDGQGNCNLTRTRAATALGA 661

Query: 698 ALAKIDGH--KVILGDMNSYGMEDPMLVLTDYTPEKYGKTIRAARNTYIAGLEQFGDAGA 755
            LA   G    +++GDMN+Y  EDP+              +R A   Y+   +  G +GA
Sbjct: 662 WLASEYGELPTLVIGDMNAYAKEDPI------------DALRGA--GYLELFDHLGKSGA 707

Query: 756 EIKHSYGYLNAVAMKHPDSWSYSFNDEVGALDHLLVSPSLKHKVVDATDWHINGAESTLF 815
                              +SY F+ E G LDH L +  L  +VVD T+WHIN  E  L 
Sbjct: 708 -------------------YSYVFSGETGQLDHALANTQLADRVVDVTEWHINTDEPRLL 748

Query: 816 DYNDEFK--GNLPKY--KDQFRASDHDPAVLEL 844
           DYN+EFK  G +      D +R+SDHDP V+ L
Sbjct: 749 DYNEEFKSAGQIESLYSSDAYRSSDHDPVVISL 781