Pairwise Alignments

Query, 869 a.a., nuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 871 a.a., extracellular nuclease (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  565 bits (1457), Expect = e-165
 Identities = 358/902 (39%), Positives = 508/902 (56%), Gaps = 67/902 (7%)

Query: 3   MRTTPNLTRSTLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQL 62
           M     LT  +LA+A +  ++A   A+++I++YVEGSS NKAIE+ N+ +  + L GY+L
Sbjct: 1   MENVNKLTAVSLAVAAALPMMAN--ANVMITEYVEGSSNNKAIELYNSGNTAIDLTGYKL 58

Query: 63  AMSTNGSGTWDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIAL 122
               +G+        LDGQ IA +   VI + S    +    D  + T+ +FNG D +AL
Sbjct: 59  VRYKDGATDAADMQVLDGQSIAPKATKVILNSSGVITLPQGVDSFSGTL-SFNGGDAVAL 117

Query: 123 LNSDGSVHDVVGSMGG-ADFAKDNTLART--TLTPSATYQASDWATQGKDNIDGLGALDT 179
           +  DG+V D++G +     +  D TL R   +L  +  +  + W    KD   GLG+LDT
Sbjct: 118 VK-DGAVVDIIGDVPTPVGWGLDVTLKRKLDSLVANTVFNPAQWEQLPKDTFTGLGSLDT 176

Query: 180 TTPPS--AFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGL 237
            T P   AF+C+  GA+     I Q+QG G +SPY+    + +  +  V+GVV+A    L
Sbjct: 177 PTKPETPAFSCS--GAK--IVPIYQVQGAGESSPYVPAGAFESESEVTVRGVVTARGENL 232

Query: 238 TKGFYLQSLEDDYNPNTSEGLFVFTNQSSSD-LAPGDVVCVKGKVQEYYNLTQLKAENNQ 296
            KGFYLQ ++ D +P TS+G+FVF  ++    + PG  +CV+GKV+EY+ LTQ+  + ++
Sbjct: 233 FKGFYLQEVKGDNSPYTSDGVFVFLGEAPPPAIQPGVEICVQGKVKEYFGLTQIDIKTDK 292

Query: 297 WVKQGQQAAPQAQAIEILPSDEHFAQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNN 356
             + G +      A   +   E  AQ LER+EGM V      D+++ RTF YDYA +RNN
Sbjct: 293 KFEAGTKGEVPVAAPFYVAEGETLAQALERFEGMNVLLDAGSDLKINRTFSYDYAGKRNN 352

Query: 357 MVLAQGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPDGQIPYYPTFGRTDVD 416
           M+++     M+P Q +PA S +A+     N + +LF+ESD K  DG IPY+P F      
Sbjct: 353 MLVSYKAPLMKPTQLYPALSAEATALAKSNRENQLFIESDYKPADGIIPYFPDF------ 406

Query: 417 QDGSTEDYIRIDDTVSGLEGVVSYSYNEYRLIVTNTISAENLVHNAPRQAKPDL-DEGDL 475
              +   YIR+ D ++ L+GVV YSY  YRL+ TNTI+A + +    R   P +  +GD+
Sbjct: 407 --NAETGYIRVGDQLTNLQGVVGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDI 464

Query: 476 RIATFNVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIEN 535
           R+A+FNVLN+FN   GGD N  G NRGA    E  +Q+ KIV+AI  ++ADIVGLMEI N
Sbjct: 465 RVASFNVLNFFNDVVGGDTNPSGGNRGALTEEEMLLQRTKIVSAITAMNADIVGLMEIAN 524

Query: 536 NGFGEGSAIAQLVNQIN-SQIADKKKHYRFVAIDSNGDGKTDAADSLGTDVITTGVIYRD 594
           NGFGE SAI  LV+ +N  Q  +    Y  +A     DGK       G+D IT G++YR 
Sbjct: 525 NGFGEKSAIKNLVDALNEKQTTENAYSYIQIADTDKYDGK-----YFGSDAITVGMLYRA 579

Query: 595 KVVKLA-QNRVIPMPSQQAPEVVDANGKV--IEDGKN--------YQRDTLAPTFKVKGG 643
             V LA   R I  P Q A     + G V  I+DGK         YQR +LA TFK+   
Sbjct: 580 GKVSLAGAARTIETPEQHA-----SVGSVTRIKDGKTETNPGNDAYQRHSLAQTFKIH-- 632

Query: 644 NEKITVAVNHFKSKGSACWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKID 703
           ++ +TV VNH KSK S C ED    E+        D QG C  FRV+AA  LG+AL  + 
Sbjct: 633 DQNLTVVVNHLKSKNSGCLEDWVNFEESVDPA---DLQGRCNEFRVSAAKVLGEALKDVK 689

Query: 704 GHKVILGDMNSYGMEDPMLVLTDYTPEKYGKTIRAARNTYIAGLEQFGDAGAEIKHSYGY 763
           G  +++GDMN+YGMEDP+ VLTD+   K  + I  A  T + G + +   G++I   YG 
Sbjct: 690 GDLLVIGDMNAYGMEDPLRVLTDFDASKSDRDIMTASWTTLNG-KVYERQGSKIDKGYGL 748

Query: 764 LNAVAMKH-PDSWSYSFNDEVGALDHLLVSPSLKHKVVDATDWHINGAESTLFDYNDEFK 822
           +N     H   ++SYS+N E+G LDH L + SL  ++VD  DWHIN  ES+LF++  +F 
Sbjct: 749 INLNTKAHGTGTYSYSYNGELGNLDHALANTSLAKRLVDIEDWHINSVESSLFEFGKKFS 808

Query: 823 GNLPKYKDQFRASDHDPAVLELNI---------------YGGSLGLGALLGLLGLGVWRR 867
           GNL K ++ F ASDHDP ++ L+                 GG+LG   L  L  LG+ RR
Sbjct: 809 GNLVKSENAFSASDHDPVIVALSYPAPVVPPKPQPTPKDDGGALGYLGLALLSLLGLQRR 868

Query: 868 RR 869
           RR
Sbjct: 869 RR 870