Pairwise Alignments

Query, 869 a.a., nuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 948 a.a., PKD domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  342 bits (877), Expect = 6e-98
 Identities = 291/871 (33%), Positives = 420/871 (48%), Gaps = 132/871 (15%)

Query: 11  RSTLALAISFGLVAPSYA--DLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQLAMSTNG 68
           ++ LALAIS G+   ++A  +L+I++YVEGSS NKAIE+ N +  ++ L+ YQL    NG
Sbjct: 5   KTLLALAIS-GVCGFAHAADNLIITEYVEGSSNNKAIELYNPTASSIDLSQYQLRFYFNG 63

Query: 69  SGTWDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIALLNSDGS 128
           S T   T+ L G  +AA    V+A   A++ ILA  +  ++    FNG+D I L   D  
Sbjct: 64  STTVGTTIALTG-TLAAGATHVVADNDASADILAVTNQQSSASF-FNGDDAIVLTYQD-Q 120

Query: 129 VHDVVGSMG---GADFA------KDNTLAR--------TTLTPSATYQASDWATQGKDNI 171
           V D +G +G   G+++       +DNTL R        T +    T+    W    KD+I
Sbjct: 121 VIDSLGQVGVDPGSEWGSGDLSTQDNTLRRNPEQLIADTIIDDVVTFNT--WLGFAKDDI 178

Query: 172 DGLGALDTTTP-------PSAFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDF 224
             LG     TP       PS+  C     E S T I  +QG  + SP       +  +  
Sbjct: 179 SDLGKFSAGTPTDPVEPPPSSLAC----GEAS-TPIHALQGSTNVSP-------LNGQTL 226

Query: 225 FVKGVVSAVTTGLTKGFYLQSLED--DYNPNTSEGLFVFTNQSSSDLAPGDVVCVKGKVQ 282
            V+ +V +      KG ++Q  ++  D +P TSEG+FV+T  + +    GD V +K KV 
Sbjct: 227 VVEAIVVSNQEAGLKGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVT 286

Query: 283 EYYNLTQLKAENNQWVKQGQQAAPQAQAIEILPSDEHFAQTLERYEGMLVKTTPELDMRV 342
           EY  LT+L    +  +    Q  P A A+  LP +   +   E +EGM V+ + +L +  
Sbjct: 287 EYQGLTELTTVADHKLCAAGQTLPTA-AVVTLPVNS--SDDFEPFEGMRVRFSQDLVVNE 343

Query: 343 TRTFGYDYASRRNNMVLAQGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPDG 402
               G     R   + L   R  +    Q  A    A      N +  + ++    A + 
Sbjct: 344 VYNLG-----RYGEISLGSSRHFI--GTQVAAPGTDALAVTAANLKDSILLDDGLTAQNP 396

Query: 403 QIPYYPTFGRTDVDQDGSTEDYIRIDDTVSGLEGVVSYSYNEYRLIVTNTISAENLVHNA 462
               +P  G        S  + +R+ D  + L GV+ Y +N YR++ T  +   N V   
Sbjct: 397 DPVIFPAPGL-------SASNTVRVGDKATSLTGVMHYGFNLYRIMPTEPV---NFVAEN 446

Query: 463 PRQAKPDLDEG-DLRIATFNVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIV 521
           PR   P L EG +L++A+FNVLNYFN    G  +     RGAN L+EFE Q+AKIV+A+V
Sbjct: 447 PRPQSPVLAEGGNLKVASFNVLNYFNGD--GQGSGFPTARGANTLSEFERQKAKIVSAMV 504

Query: 522 RLDADIVGLMEIENNGFGEGSAIAQLVNQINSQIADKKKHYRFVAIDSNGDGKTDAADSL 581
              AD+ GLMEIEN+GFG  SAIA LV  +N+ + + +  Y +V    NG        ++
Sbjct: 505 GTSADVFGLMEIENDGFGANSAIADLVAGLNAAVGENR--YAYVIPKVNGSN----LSAI 558

Query: 582 GTDVITTGVIYR-DKVVKLAQNRVIPMPSQQAPEVVDANGKVIEDGKNYQRDTLAPTFKV 640
           GTD IT G+IYR DKV      R++   S     + DA   + +D KN  R  L   F +
Sbjct: 559 GTDAITVGLIYRSDKVSPQGDARIL---SSANSPLDDAGQPLFDDSKN--RPMLTQAFVL 613

Query: 641 KGGNEKITVAVNHFKSKGSACWEDAAPVEQGGQAGKDL-DYQGACENFRVAAAVALGDAL 699
            G  E + VAVNH KSKGS C  D            D+ D QG C   R  AA A G  +
Sbjct: 614 NGSEESVVVAVNHLKSKGSECAGD-----------PDMNDGQGNCNITRTRAATAAGQWI 662

Query: 700 AK--IDGHKVILGDMNSYGMEDPMLVLTDYTPEKYGKTIRAARNTYIAGLEQFGDAGAEI 757
           A+   +   +++GD+NSY  EDP+  L +                  AG   F +  A++
Sbjct: 663 AEQYPEQGVLLIGDLNSYAKEDPLSALAN------------------AG---FSELFAKL 701

Query: 758 KHSYGYLNAVAMKHPDSWSYSFNDEVGALDHLLVSPSLKHKVVDATDWHINGAESTLFDY 817
           + +  Y            SY F+ E G LDH L + +L  KVVD T+WHIN  E  + DY
Sbjct: 702 EKANPY------------SYVFSGESGQLDHALANTALVDKVVDVTEWHINTDEPRVLDY 749

Query: 818 NDEFKGNLPKY----KDQFRASDHDPAVLEL 844
           N+EFK           D +R+SDHDP V+ L
Sbjct: 750 NEEFKTAAQVQDLYASDAYRSSDHDPVVISL 780