Pairwise Alignments

Query, 869 a.a., nuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 870 a.a., endonuclease/exonuclease/phosphatase (RefSeq) from Shewanella sp. ANA-3

 Score =  573 bits (1477), Expect = e-167
 Identities = 354/886 (39%), Positives = 498/886 (56%), Gaps = 51/886 (5%)

Query: 12  STLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQLAMSTNGSGT 71
           + ++LA++  L   + AD++I++YVEGSS NKAIE+ N+ D  + L GY+L    +G+  
Sbjct: 8   TAISLAVAAALPMMASADVMITEYVEGSSNNKAIELYNSGDTAIDLAGYKLVRYKDGATD 67

Query: 72  WDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIALLNSDGSVHD 131
                 LDGQ IA +   VI + SA   +    D  + ++ +FNG D +AL+  DG+V D
Sbjct: 68  ALDMQALDGQSIAPKSTKVILNSSAVITLPQGVDSFSGSL-SFNGGDAVALVK-DGAVVD 125

Query: 132 VVGSMGG-ADFAKDNTLART--TLTPSATYQASDWATQGKDNIDGLGALDTTTPPSAFNC 188
           ++G +     +  D TL R   +L  +  +  + W    KD   GLG+L+  T P     
Sbjct: 126 IIGDVPTPTGWGLDVTLQRKLDSLVANTVFNPAQWEQLPKDTFTGLGSLEAATEPETPVF 185

Query: 189 TLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGLTKGFYLQSLED 248
           +  GA+     I Q+QG G +SPY+    + +  +  V+GVV+A    L KGFYLQ ++ 
Sbjct: 186 SCSGAK--IVPIYQVQGAGESSPYVPEGAFESETEVTVRGVVTARGESLFKGFYLQEVKG 243

Query: 249 DYNPNTSEGLFVFTNQSSSD-LAPGDVVCVKGKVQEYYNLTQLKAENNQWVKQGQQAAPQ 307
           D +P TS+G+FVF  ++  + + PG  VCV+GKV+EY+ LTQ+  + ++  + G +    
Sbjct: 244 DNSPYTSDGVFVFLGENPPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKGEVP 303

Query: 308 AQAIEILPSDEHFAQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNNMVLAQGRINMQ 367
           A     +   E  AQ LERYEGM VK     D++++RTF YDYA RRNNM+++     M+
Sbjct: 304 AATPFYVADGETLAQALERYEGMNVKLDAGSDLKISRTFSYDYAGRRNNMLVSYKAPLMK 363

Query: 368 PNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPDGQIPYYPTFGRTDVDQDGSTEDYIRI 427
           P Q +PA S +A+     N + +LF+ESD K  DG IPY+P F             YIR+
Sbjct: 364 PTQLYPALSPEATALVKSNLENQLFIESDYKPADGVIPYFPDF--------NVETGYIRV 415

Query: 428 DDTVSGLEGVVSYSYNEYRLIVTNTISAENLVHNAPRQAKPDL-DEGDLRIATFNVLNYF 486
            D ++ LEGV+ YSY  YRL+ TNTI+A + +    R   P +  +GD+R+A+FNVLN+F
Sbjct: 416 GDQLTNLEGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDIRVASFNVLNFF 475

Query: 487 NSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIENNGFGEGSAIAQ 546
           N   GGD N  G NRGA    E  +Q+AKIV+AI  ++ADIVGLMEI NNGFGE SAI  
Sbjct: 476 NDVVGGDTNPSGSNRGALTEEEMLLQRAKIVSAITAMNADIVGLMEIANNGFGEKSAIKN 535

Query: 547 LVNQIN-SQIADKKKHYRFVAIDSNGDGKTDAADSLGTDVITTGVIYRDKVVKLA-QNRV 604
           LV+ +N  Q AD    +  +  +   DGK       G+D IT G++YR   V LA   R 
Sbjct: 536 LVDALNEKQTADNAYSFVEITDEDKYDGK-----YFGSDAITVGMLYRAGKVSLAGAARA 590

Query: 605 IPMPSQQA-----PEVVDANGKVIEDGKNYQRDTLAPTFKVKGGNEKITVAVNHFKSKGS 659
           I  P Q A         D   +       YQR +LA TFK+   +E +TV VNH KSKGS
Sbjct: 591 IDTPEQHATAGSVTRTKDGKTETNPGNDAYQRHSLAQTFKIH--DENLTVVVNHLKSKGS 648

Query: 660 ACWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKIDGHKVILGDMNSYGMED 719
            C ED    E+        D QG C  FRV+AA  LG+AL  + G  +++GDMN+YGMED
Sbjct: 649 GCLEDWVNFEESVDPA---DQQGKCNAFRVSAAKVLGEALKDVKGDLLVIGDMNAYGMED 705

Query: 720 PMLVLTDYTPEKYGKTIRAARNTYIAGLEQFGDAGAEIKHSYGYLNAVAMKH-PDSWSYS 778
           P+ VLTDY   K  + I  A  T + G + F   G++I+  YG +N     H   ++SYS
Sbjct: 706 PIRVLTDYDASKSERDIMTASWTTLDG-KVFERQGSKIEKGYGLINLNTKAHGAGTYSYS 764

Query: 779 FNDEVGALDHLLVSPSLKHKVVDATDWHINGAESTLFDYNDEFKGNLPKYKDQFRASDHD 838
           +N E+G LDH L + SL  ++VD  DWHIN  ES LF+Y  +F G L K ++ F ASDHD
Sbjct: 765 YNGELGNLDHALANTSLAKRLVDIEDWHINSVESNLFEYGKKFSGELAKSENAFSASDHD 824

Query: 839 PAVLELNI---------------YGGSLGLGALLGLLGLGVWRRRR 869
           P ++ L+                 GG+LG   L  L   G+ RRRR
Sbjct: 825 PVIVALSYPAPVEPPKPEPKPKDDGGALGYLGLALLSLFGLQRRRR 870