Pairwise Alignments

Query, 638 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 529 a.a., ATPase components of ABC transporters with duplicated ATPase domains from Pseudomonas stutzeri RCH2

 Score =  308 bits (790), Expect = 3e-88
 Identities = 173/525 (32%), Positives = 289/525 (55%), Gaps = 10/525 (1%)

Query: 1   MITFSEIQLLRGGKPLLEQASATIHPGDKVGLVGKNGCGKSTLFALLKDELTIDAGSFSK 60
           MI+ + I +  G KPL E  S     G++ GL+G NGCGKST   +L  +L   AG    
Sbjct: 1   MISTANITMQFGAKPLFENVSVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGQVML 60

Query: 61  PAHWELAWVAQETPALDR-TALEYVIDGDREYRELERQL-----MDAEAADNGTKVADLH 114
             +  L  + Q+  A +    ++ VI G  +  +++ +      +   + ++G KV +L 
Sbjct: 61  EPNVRLGKLRQDQFAYEEFNVIDTVIMGHEDLWKVKAERDRIYSLPEMSEEDGMKVGELE 120

Query: 115 GKIEMVGGYSIRARASELLDGLGFTQEQMSWSLTQFSGGWRMRLNLAQALICRSDLLLLD 174
           G+   + GY+  +RA ELL GLG   EQ    +++ + GW++R+ LAQAL    D+LLLD
Sbjct: 121 GEFAEMDGYTAESRAGELLLGLGIPLEQHFGPMSEVAPGWKLRVLLAQALFSDPDVLLLD 180

Query: 175 EPTNHLDLDAVMWLERWLQSYPGTLILISHDRDFLDPIVNRIVHIENQTLNEYTGNYSSF 234
           EPTNHLD++ + WLE  L +   T+I+ISHDR FL+ +   +  ++   L  + GNY  +
Sbjct: 181 EPTNHLDINTIRWLETILTARNSTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEY 240

Query: 235 ETQRAQKMLQQQAIYQKQQKQMAHMQSYIDRFRYKASKARQAQSRIKALERME--KVLPA 292
            T   Q   Q  +   K++ Q+A +Q+++ RF   ASKA+QA SR K +++++  +V P+
Sbjct: 241 MTAATQSREQLLSDNAKKKAQIAELQTFVSRFSANASKAKQATSRAKQIDKIQLAEVKPS 300

Query: 293 QFDNPFSFEFREPAALPNPILMMDQVAAGYGDHLILEKIRLNLVPGSRIGLLGRNGAGKS 352
              +PF   F +   L    + +++++  + D  + +     +  G R+ ++G NG GK+
Sbjct: 301 SRISPF-IRFEQTKKLHRQAVTVERLSKAFDDKELFKNFSFTVEAGERVAIIGPNGIGKT 359

Query: 353 TLIKLLSGELKPQSGDCTYSQGVKIGYFAQHQLETLHPEETPLQHMMQIAPDKNELELRN 412
           TL++ L GEL P SG   +++    GY+AQ        + +    M Q      +L +R 
Sbjct: 360 TLLRTLVGELTPDSGSVKWTESADYGYYAQDHAHDFEDDVSLFDWMGQWTQGGEQL-VRG 418

Query: 413 YLGSFGFHGEKALEKVAPFSGGEKARLVLALIVWQKPNLLLLDEPTNHLDLDMRQALTLA 472
            LG   F  ++ L+ V   SGGE+ R++   ++ QKPN+L++DEPTNHLD++  +AL LA
Sbjct: 419 TLGRMLFSNDEILKSVKVISGGEQGRMLFGKLILQKPNVLVMDEPTNHLDMESIEALNLA 478

Query: 473 LQSYEGAMVIVSHDRYLLRATTDDLYLVHDHQVGPFDGDLNDYYK 517
           L++Y G ++ VSHDR  + +    +  +  + V  F G  +DY +
Sbjct: 479 LENYPGTLIFVSHDREFVSSLATRIIELSANGVTDFSGSYDDYLR 523



 Score = 92.4 bits (228), Expect = 4e-23
 Identities = 70/275 (25%), Positives = 127/275 (46%), Gaps = 46/275 (16%)

Query: 322 YGDHLILEKIRLNLVPGSRIGLLGRNGAGKSTLIKLLSGELKPQSGDCTYSQGVKIGYFA 381
           +G   + E + +    G+R GL+G NG GKST +K+L G+L+P +G       V++G   
Sbjct: 11  FGAKPLFENVSVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGQVMLEPNVRLGKLR 70

Query: 382 QHQL--ETLHPEETPL---QHMMQIAPDKNEL----------------------ELRNY- 413
           Q Q   E  +  +T +   + + ++  +++ +                      E+  Y 
Sbjct: 71  QDQFAYEEFNVIDTVIMGHEDLWKVKAERDRIYSLPEMSEEDGMKVGELEGEFAEMDGYT 130

Query: 414 --------LGSFGFHGEKALEKVAPFSGGEKARLVLALIVWQKPNLLLLDEPTNHLDLDM 465
                   L   G   E+    ++  + G K R++LA  ++  P++LLLDEPTNHLD++ 
Sbjct: 131 AESRAGELLLGLGIPLEQHFGPMSEVAPGWKLRVLLAQALFSDPDVLLLDEPTNHLDINT 190

Query: 466 RQALTLALQSYEGAMVIVSHDRYLLRATTDDLYLVHDHQVGPFDGDLNDYYKWLTD---- 521
            + L   L +    M+I+SHDR+ L +    +  +   ++  F G+ ++Y    T     
Sbjct: 191 IRWLETILTARNSTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEYMTAATQSREQ 250

Query: 522 ------QQKAERKETQPTNTANSANSAAAKKEQKR 550
                 ++KA+  E Q   +  SAN++ AK+   R
Sbjct: 251 LLSDNAKKKAQIAELQTFVSRFSANASKAKQATSR 285