Pairwise Alignments

Query, 638 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  483 bits (1243), Expect = e-140
 Identities = 264/629 (41%), Positives = 394/629 (62%), Gaps = 17/629 (2%)

Query: 12  GGKPLLEQASATIHPGDKVGLVGKNGCGKSTLFALLKDELTIDAGSFSKPAHWELAWVAQ 71
           GG+ LL++A+A I  G ++GL+G+NG GK+TLF L+  EL+ D GS +      +  VAQ
Sbjct: 12  GGRTLLDEATAHIPEGQRIGLIGRNGTGKTTLFRLILGELSGDGGSIAVRPRARVGQVAQ 71

Query: 72  ETPALDRTALEYVIDGDREYRELERQLMDAEAADNGTKVADLHGKIEMVGGYSIRARASE 131
           E P  D T L+ V+  D E   L   L   E   +   + ++H ++  +G +S  ARA  
Sbjct: 72  EAPDGDTTLLDCVLAADAERASL---LAALEGDTDPHHLGEIHDRLNAIGAHSAPARAGA 128

Query: 132 LLDGLGFTQEQMSWSLTQFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVMWLERW 191
           +L GLGF+ E  + ++ +FSGGWRMR+ LA AL  R DLLLLDEPTNHLDL+A +WLE +
Sbjct: 129 ILSGLGFSAEAQARAVGEFSGGWRMRVALAAALFSRPDLLLLDEPTNHLDLEATLWLEGF 188

Query: 192 LQSYPGTLILISHDRDFLDPIVNRIVHIENQTLNEYTGNYSSFETQRAQKMLQQQAIYQK 251
           L +YPGTL++ISHDRD L+  V RI+H++N  L  Y GN+  FE  R ++M  Q   + +
Sbjct: 189 LANYPGTLLIISHDRDLLNRAVGRIIHLDNGKLVAYAGNFDRFERTRRERMEHQSKAFVR 248

Query: 252 QQKQMAHMQSYIDRFRYKASKARQAQSRIKALERMEKVLPAQFDNPFSFEFREPAALPNP 311
           Q ++   +Q+++DRFR KA+KARQAQSR+K LERM+ V     D+   F+F +P  LP P
Sbjct: 249 QTEERKRIQAFVDRFRAKATKARQAQSRLKMLERMQPVEAVVEDSTIPFDFPDPDQLPPP 308

Query: 312 ILMMDQVAAGYGDHLILEKIRLNLVPGSRIGLLGRNGAGKSTLIKLLSGELKPQSGDCTY 371
           I+  D VAAGY    +L  + L L    R+ LLG NG GKSTL K+L+G L P SG+   
Sbjct: 309 IVAFDDVAAGYDGVAVLRGVTLRLDMEDRVALLGANGNGKSTLAKVLAGRLAPLSGEIRM 368

Query: 372 SQGVKIGYFAQHQLETLHPEETPLQHMMQIAPDKNELELRNYLGSFGFHGEKALEKVAPF 431
              ++IGYFAQHQ + L   E+PL H  ++  + ++ ++R +LG FGF  ++    VA  
Sbjct: 369 PSKLRIGYFAQHQTDELRMGESPLLHGRRLMGELSDQKIRGHLGRFGFGEDRVHTPVANL 428

Query: 432 SGGEKARLVLALIVWQKPNLLLLDEPTNHLDLDMRQALTLALQSYEGAMVIVSHDRYLLR 491
           SGGEKARL++AL   + P+LL+LDEPTNHLD+D R++L  AL  ++GA++++SHD  L+ 
Sbjct: 429 SGGEKARLLIALTCREAPHLLILDEPTNHLDIDSRESLMQALNVFQGAVLLISHDPRLVE 488

Query: 492 ATTDDLYLVHDHQVGPFDGDLNDYYKWLTDQQKAERKETQPTNTAN--------SANSAA 543
              D L+LV   +V  F+GD++DY K L ++ +  R+E   +++AN        +A SA+
Sbjct: 489 MVADRLWLVDGGKVTSFEGDMDDYRKLLLERARDARREAS-SDSANAGEAAAEGAATSAS 547

Query: 544 AKKEQKRREADFRKLTAPIRKKLTQLEEKLDKLNHVVSEMEAQLSDTSLYEA--QNKATL 601
           A+++++R  A+ R   AP+R+   + E ++DKL    ++++A L+D +LY    +  A L
Sbjct: 548 ARQDRRRAAAEARVRLAPLRRVAEKAEAQVDKLTTEKAKIQAALADPALYRGPKEKVALL 607

Query: 602 TEVLAKQAAAKSELEQVELEWMAEQETLE 630
            + L +   A   L   E  W++ QE L+
Sbjct: 608 QQDLGRVDRA---LAGAEDAWLSAQEALD 633



 Score = 82.4 bits (202), Expect = 6e-20
 Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 39/320 (12%)

Query: 1   MITFSEIQLLRGGKPLLEQASATIHPGDKVGLVGKNGCGKSTLFALLKDELTIDAGSFSK 60
           ++ F ++     G  +L   +  +   D+V L+G NG GKSTL  +L   L   +G    
Sbjct: 309 IVAFDDVAAGYDGVAVLRGVTLRLDMEDRVALLGANGNGKSTLAKVLAGRLAPLSGEIRM 368

Query: 61  PAHWELAWVAQETPALDRTALEYVIDGDREYRELERQLMDAEAADNGTKVADLHGKIEMV 120
           P+   + + AQ      R     ++ G R   EL  Q                       
Sbjct: 369 PSKLRIGYFAQHQTDELRMGESPLLHGRRLMGELSDQ----------------------- 405

Query: 121 GGYSIRARASELLDGLGFTQEQMSWSLTQFSGGWRMRLNLAQALICRS--DLLLLDEPTN 178
               IR      L   GF ++++   +   SGG + RL +  AL CR    LL+LDEPTN
Sbjct: 406 ---KIRGH----LGRFGFGEDRVHTPVANLSGGEKARLLI--ALTCREAPHLLILDEPTN 456

Query: 179 HLDLDAVMWLERWLQSYPGTLILISHDRDFLDPIVNRIVHIENQTLNEYTG---NYSSFE 235
           HLD+D+   L + L  + G ++LISHD   ++ + +R+  ++   +  + G   +Y    
Sbjct: 457 HLDIDSRESLMQALNVFQGAVLLISHDPRLVEMVADRLWLVDGGKVTSFEGDMDDYRKLL 516

Query: 236 TQRAQKMLQQQAIYQKQQKQMA--HMQSYIDRFRYKASKARQAQSRIKALERMEKVLPAQ 293
            +RA+   ++ +       + A     +     + +   A +A+ R+  L R+ +   AQ
Sbjct: 517 LERARDARREASSDSANAGEAAAEGAATSASARQDRRRAAAEARVRLAPLRRVAEKAEAQ 576

Query: 294 FDNPFSFEFREPAALPNPIL 313
            D   + + +  AAL +P L
Sbjct: 577 VDKLTTEKAKIQAALADPAL 596