Pairwise Alignments

Query, 638 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  289 bits (740), Expect = 2e-82
 Identities = 173/527 (32%), Positives = 292/527 (55%), Gaps = 17/527 (3%)

Query: 1   MITFSEIQLLRGGKPLLEQASATIHPGDKVGLVGKNGCGKSTLFALLKDELTIDAGSFSK 60
           MIT + I +  G KPL E  S     G++ GL+G NGCGKST   +L  +L   +G+ S 
Sbjct: 1   MITTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILCGDLEPSSGNVSL 60

Query: 61  PAHWELAWVAQETPALDR-TALEYVIDGDREYRELERQL-----MDAEAADNGTKVADLH 114
             +  L  ++Q     +  T ++ VI G RE  +++++      +   + ++G  VA+L 
Sbjct: 61  DVNERLGKLSQNQFGYEEYTLIDTVIMGHRELWKVKQERDRIYSLPEMSEEDGIAVANLE 120

Query: 115 GKIEMVGGYSIRARASELLDGLGFTQEQMSWSLTQFSGGWRMRLNLAQALICRSDLLLLD 174
            +   + GY+  +RA ELL G+G   E     +++ + G ++R+ LAQAL    D+LLLD
Sbjct: 121 MEFAEMDGYTAESRAGELLLGVGIGIESHFGLMSEIAPGLKLRVLLAQALFSDPDVLLLD 180

Query: 175 EPTNHLDLDAVMWLERWLQSYPGTLILISHDRDFLDPIVNRIVHIENQTLNEYTGNYSSF 234
           EPTN+LD+D + WL+  L     T+I+ISHDR FL+ +   +  ++   L  Y GNY  +
Sbjct: 181 EPTNNLDIDTIRWLQDVLNQRDSTMIIISHDRYFLNSVCTHMADLDYGELRVYPGNYDEY 240

Query: 235 ---ETQRAQKMLQQQAIYQKQQKQMAHMQSYIDRFRYKASKARQAQSRIKALE--RMEKV 289
               TQ  +++L   A   K++ Q++ +Q+++ RF   ASKA+QA SR + ++  ++++V
Sbjct: 241 MQAATQARERLLADNA---KKKAQISELQTFVARFSANASKAKQATSRARQIDKIKLDEV 297

Query: 290 LPAQFDNPFSFEFREPAALPNPILMMDQVAAGYGDHLILEKIRLNLVPGSRIGLLGRNGA 349
             +   NPF   F +   L    L+++ +A GY D  + + + L +  G RI +LG NG 
Sbjct: 298 KASSRVNPF-IRFDQEKKLFRNALVVENLAKGY-DTPLFKDLNLIVEVGERIAILGENGV 355

Query: 350 GKSTLIKLLSGELKPQSGDCTYSQGVKIGYFAQHQLETLHPEETPLQHMMQ-IAPDKNEL 408
           GK+TL++ L  ++    G   +S+   IGY+AQ        + T  + M Q   P+ ++ 
Sbjct: 356 GKTTLLRTLIHDIPQDEGHIQWSENSNIGYYAQDHESDFENDMTLFEWMSQWRKPEDDDQ 415

Query: 409 ELRNYLGSFGFHGEKALEKVAPFSGGEKARLVLALIVWQKPNLLLLDEPTNHLDLDMRQA 468
            +R  LG   F  +   + V   SGGEK R++   ++ QKPN+L+LDEPTNH+D++  ++
Sbjct: 416 AVRGILGRMLFSADDIKKSVKVLSGGEKGRMLFGKLIMQKPNILMLDEPTNHMDMESIES 475

Query: 469 LTLALQSYEGAMVIVSHDRYLLRATTDDLYLVHDHQVGPFDGDLNDY 515
           L  AL+ YEG ++ VSHDR  + +  + +  +  + V  F G  +++
Sbjct: 476 LNNALEKYEGTLLFVSHDRAFVSSLANRILEITPNGVNDFKGTYDEF 522



 Score = 97.1 bits (240), Expect = 2e-24
 Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 52/328 (15%)

Query: 322 YGDHLILEKIRLNLVPGSRIGLLGRNGAGKSTLIKLLSGELKPQSGDCTYSQGVKIGYFA 381
           +G   + E I +    G+R GL+G NG GKST +K+L G+L+P SG+ +     ++G  +
Sbjct: 11  FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILCGDLEPSSGNVSLDVNERLGKLS 70

Query: 382 QHQ--------LETLHPEETPLQHMMQ----------------IAPDKNELELRNYLG-- 415
           Q+Q        ++T+      L  + Q                IA    E+E     G  
Sbjct: 71  QNQFGYEEYTLIDTVIMGHRELWKVKQERDRIYSLPEMSEEDGIAVANLEMEFAEMDGYT 130

Query: 416 ----------SFGFHGEKALEKVAPFSGGEKARLVLALIVWQKPNLLLLDEPTNHLDLDM 465
                       G   E     ++  + G K R++LA  ++  P++LLLDEPTN+LD+D 
Sbjct: 131 AESRAGELLLGVGIGIESHFGLMSEIAPGLKLRVLLAQALFSDPDVLLLDEPTNNLDIDT 190

Query: 466 RQALTLALQSYEGAMVIVSHDRYLLRATTDDLYLVHDHQVGPFDGDLNDYYKWLTD---- 521
            + L   L   +  M+I+SHDRY L +    +  +   ++  + G+ ++Y +  T     
Sbjct: 191 IRWLQDVLNQRDSTMIIISHDRYFLNSVCTHMADLDYGELRVYPGNYDEYMQAATQARER 250

Query: 522 ------QQKAERKETQPTNTANSANSAAAKKEQKR-READFRKL-----TAPIRKKLTQL 569
                 ++KA+  E Q      SAN++ AK+   R R+ D  KL     ++ +   +   
Sbjct: 251 LLADNAKKKAQISELQTFVARFSANASKAKQATSRARQIDKIKLDEVKASSRVNPFIRFD 310

Query: 570 EEKLDKLNHVVSEMEAQLSDTSLYEAQN 597
           +EK    N +V E  A+  DT L++  N
Sbjct: 311 QEKKLFRNALVVENLAKGYDTPLFKDLN 338