Pairwise Alignments

Query, 622 a.a., DUF3413 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  195 bits (495), Expect = 5e-54
 Identities = 161/617 (26%), Positives = 275/617 (44%), Gaps = 52/617 (8%)

Query: 18  IKKNIEWLFSHFILNAVLLAVLGLPYLQWMEVSSSNRVAYAYLSATQFGWFGLFAFA--- 74
           + + I W       N +L  ++G  YL  +    +    + YL+ +  G F   AF    
Sbjct: 13  VSRLINWGHWFAFFNGLLAMIVGTRYLSSVGYPET-WFGWGYLAVSTIGQFSFLAFIAYL 71

Query: 75  ITLVSLALVWLPSRLLHGVVFVASWAVSILLMVDIEVYQQYRFHLSGFVWDL-------L 127
           I L  L L+   S++L G+  V +     LL+ D  VY  Y  HLS F +D+       L
Sbjct: 72  ICLFPLTLILPYSKILRGLAAVIATLSLCLLLYDTIVYADYGMHLSPFAFDIAWADLSAL 131

Query: 128 LHGGQQVISVSWYTLAMAGFIVFVVGFAQWLIMKLAQRIQHSRGVRWVSAVWLLSLLSSQ 187
           LHG   +++     +A+    +    F    + K  ++IQ       V A   +  +SS 
Sbjct: 132 LHGTSYIVT----PIAILAIELTAANF----LWKRIEKIQKLNLGNKVIAFVGVCFVSSH 183

Query: 188 FIHAWKDATYDSEIPSYSYHWPLYYPLTAKRFFDQLGVVDAQSARRQQVDFHAPTSSTLN 247
            IH W DA   +EI  +   +PL YP TA+ F +  G+ D  S   Q  D     S+TL+
Sbjct: 184 LIHIWADAADITEITRFDDTYPLSYPATARSFMESHGI-DGSS---QINDEATQASNTLS 239

Query: 248 YPLRPLHIEPPAERPNILLIGIDAWRFDDANRDVTPNIAHFGQQATRFTHHLSGGNSTQA 307
           YP++PL  +  + + N+L++ ID+ R D  +    P +  + +Q   FT H SGGN  + 
Sbjct: 240 YPIQPLQCQADS-KSNVLMLTIDSLRADMVDAKTMPFLHQYTEQNQSFTQHYSGGNQFKT 298

Query: 308 GLFSLFYGLPATYWEEFQTSQTRPLLMQTLADLNYQFAIYGSAPLNSPPFDRTIFSKIAQ 367
           G+FSL YGL  +Y +    + T PL++++     Y+  ++       P  +  + S  A 
Sbjct: 299 GMFSLLYGLQGSYGDARIFNNTSPLMIRSFKQAGYELGLF------IPETNLNLRSAQAM 352

Query: 368 LRTVTP--GENSPQRDERITEDFLHFLE-QRDRSKPYFGFLFYDSAHAADFPSSMTPPFT 424
               TP   E +    E       HF + Q  + +P+F  +   +    D P        
Sbjct: 353 FNDFTPVIAEETNGSAEADILSVGHFKQWQSAQQRPWFALVNLKAPENFDTPVGFL---- 408

Query: 425 PYWERVDHIKLNNDFDP--EPYHNRYRNALYYADSLIGKVLEQLQARDELRNTIVIITSD 482
                ++ +K + +  P  +   N+YR +L + D  I  ++ +L +     +T+V+IT  
Sbjct: 409 ----GIETVKADPNLKPAQKVLFNQYRQSLNFIDKQIQAIVSELPS-----DTLVVITGV 459

Query: 483 HGEEFNDNRQNYWGHGSNYSMAQIHVPLYIYIPDKEGSVLTHKTTHLDIAPMLMQEVLGV 542
           +G+ F  N         N S   + VPL I+ P+   S + ++T+H  + P LM  VLG 
Sbjct: 460 NGKIFTSNSDEAL---RNLSPESVRVPLVIHWPNALASKVNYRTSHYGVVPTLMTHVLGC 516

Query: 543 QNPLNEFALGYPLWQESPQREWTIIGSYFNYALVSDKEMLVSYPTGRVETLNSELAPEKE 602
            N  ++++ G  L Q S +  W  IG    +A+    E+ V    G+    +        
Sbjct: 517 TNNTSDYSAGRSLLQPS-KETWIYIGDSRIFAIYQQSEITVIDRHGKYRIYDENFEHRLH 575

Query: 603 RQISTQQIMQALEEMRQ 619
           +++S  +++Q L E R+
Sbjct: 576 KKMSAPELIQVLREGRR 592