Pairwise Alignments

Query, 622 a.a., DUF3413 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score =  197 bits (501), Expect = 1e-54
 Identities = 155/612 (25%), Positives = 275/612 (44%), Gaps = 42/612 (6%)

Query: 18  IKKNIEWLFSHFILNAVLLAVLGLPYLQWMEVSSSNRVAYAYLSATQFGWFGLFAFA--- 74
           + + I W       N +L  ++G  YL  +    +    + YL+ +  G F   AF    
Sbjct: 13  VSRLINWGHWFAFFNGLLAMIVGTRYLSSVGYPET-WFGWGYLAVSTIGQFSFLAFIAYL 71

Query: 75  ITLVSLALVWLPSRLLHGVVFVASWAVSILLMVDIEVYQQYRFHLSGFVWDLLLHGGQQV 134
           I L  L L+   S++L G+  V +     +L+ D  VY  Y  HLS F +DL       +
Sbjct: 72  ICLFPLTLILPYSKILRGLAAVIATLSLCILLYDTIVYADYGMHLSPFAFDLAWADLNAL 131

Query: 135 ISVSWYTLAMAGFIVFVVGFAQWLIMKLAQRIQHSRGVRWVSAVWLLSLLSSQFIHAWKD 194
           +  + Y +     +V  +  A +L  ++ +  + + G + ++ + +   +SS  IH W D
Sbjct: 132 LHGTSYIVTPIAILVIELTAANFLWKRIEKIQKLNLGNKVITLIGVC-FVSSHLIHIWAD 190

Query: 195 ATYDSEIPSYSYHWPLYYPLTAKRFFDQLGVVDAQSARRQQVDFHAPTSSTLNYPLRPLH 254
           A   +EI  +   +PL YP TA+ F +  G+ D  S    + + HA  +STL+YP +PL 
Sbjct: 191 AADITEITRFDDTYPLSYPATARSFMESHGI-DGSSQSDDEAN-HA--TSTLSYPTQPLQ 246

Query: 255 IEPPAERPNILLIGIDAWRFDDANRDVTPNIAHFGQQATRFTHHLSGGNSTQAGLFSLFY 314
            +  + +PN+L++ ID+ R D  +    P +  + +Q   FT H SGGN  + G+FSL Y
Sbjct: 247 CQADS-KPNVLMLTIDSLRADMVDAKTMPFLHQYTEQNQSFTQHYSGGNQFRTGMFSLLY 305

Query: 315 GLPATYWEEFQTSQTRPLLMQTLADLNYQFAIYGSAPLNSPPFDRTIFSKIAQLRTVTP- 373
           GL  +Y +    + T P++ Q+     YQ  ++       P  +  + S  A     TP 
Sbjct: 306 GLQGSYGDARIFNSTSPIMTQSFRQAGYQLGLF------IPETNLNLRSAQAMFNDFTPV 359

Query: 374 ----GENSPQRDERITEDFLHFLEQRDRSKPYFGFLFYDSAHAADFPSSMTPPFTPYWER 429
                  S   D R    F  +  Q ++  P+F  +   +    D P             
Sbjct: 360 IAKETNGSADADLRSVGHFKQW--QSEQQSPWFALVNLKAPENFDTPVGFL--------G 409

Query: 430 VDHIKLNNDFDP--EPYHNRYRNALYYADSLIGKVLEQLQARDELRNTIVIITSDHGEEF 487
           ++ +K + +  P  +   N+YR +L + D  I  ++ +L +     +T+V+IT  +G+ F
Sbjct: 410 IETVKADANLKPAQKVLFNQYRQSLNFIDKQIQAIVSELPS-----DTLVVITGVNGKIF 464

Query: 488 NDNRQNYWGHGSNYSMAQIHVPLYIYIPDKEGSVLTHKTTHLDIAPMLMQEVLGVQNPLN 547
             N         N S   + VP+ I+ P+   S + ++T+H  + P LM  +LG  N   
Sbjct: 465 TSNSDE---AQRNLSPESVRVPMVIHWPNVGASKVKYRTSHYGVVPTLMTHILGCTNNTT 521

Query: 548 EFALGYPLWQESPQREWTIIGSYFNYALVSDKEMLVSYPTGRVETLNSELAPEKERQIST 607
           +++ G  L Q S Q  W  IG    +A+    E+ V    G+    +        +++S 
Sbjct: 522 DYSAGRSLLQPS-QETWIYIGDSRIFAIYQQSEITVIDRHGKYRIYDENFEHRLHKKMSA 580

Query: 608 QQIMQALEEMRQ 619
            +++Q + E R+
Sbjct: 581 PELIQVMREGRR 592