Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 876 a.a., 3'-to-5' exoribonuclease RNase R from Pseudomonas fluorescens FW300-N2E2

 Score =  776 bits (2005), Expect = 0.0
 Identities = 414/829 (49%), Positives = 551/829 (66%), Gaps = 28/829 (3%)

Query: 1   MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR 60
           M+D   LDP A REA+ Y+NPIPSRE IL  L     P +R  L E   L  E+Q E LR
Sbjct: 1   MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR 60

Query: 61  RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH 120
           RRLRAMERD QL++TRR  YA  +KL+++ G + GH+DG G++ P+   +   D+ +   
Sbjct: 61  RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSD---DLFMSPA 117

Query: 121 QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH 180
           QMR +  GD  L + SG D+RGR+EG +V ++   +  IVGR+F E G  +VVPD+ ++ 
Sbjct: 118 QMRLVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQ 177

Query: 181 HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI 240
            ++LI       A++G  V ++IT   T      G +VEV+G  MAPGME  +A+RT+ I
Sbjct: 178 QEVLITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDI 237

Query: 241 PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKG--- 297
           PH WP  V ++ A L  EV E+ K+ R+DLR LP VTIDGEDARDFDDAVYCEAK G   
Sbjct: 238 PHVWPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLR 297

Query: 298 ---GGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQ 354
              GGW+L+VAIADVS YV+  +ALD EA  RGNSVYFP +V+PMLPE LSNGLCSLNP+
Sbjct: 298 LFSGGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPK 357

Query: 355 VDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGD-----EELRERYKA 409
           VDRL MVCEMT+S+TG+++ Y+ YEAV++S ARLTY KV  ILE       + LR  Y  
Sbjct: 358 VDRLAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRAEYAG 417

Query: 410 LVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEEC 469
           +VPHL++L+ +Y+VL  AR  RGAI+FET ET+ +F ++RKI +I P  RNDAHKLIEEC
Sbjct: 418 VVPHLKQLYSLYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEEC 477

Query: 470 MILANIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLE-PSPTDYAN 528
           M+ AN+A+A  ++K +  ALYRVH+ P  ERL   R FLGELGL L  G + P+P DY  
Sbjct: 478 MLAANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQA 537

Query: 529 LMKQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRA 588
           L+  I +RPD  +IQT++LRS+ QAVY+ADN GHFGL  + Y HFTSPIRRYPDLL HRA
Sbjct: 538 LLASIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRA 597

Query: 589 IKYLIAKQEG----RNQDRWTPTGGYHYSFDD--MDFYGEQCSMTERRADDATREVSDWL 642
           I+ +I  ++     +     T      Y +D+  ++  GEQCSM+ERRAD+ATR+V +WL
Sbjct: 598 IRSVIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWL 657

Query: 643 KCEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGE 702
           KCE+M+D VGE   GV+  VT FG FV LT+++++GLVH++ L  DYYH+DP+  RL GE
Sbjct: 658 KCEFMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGE 717

Query: 703 SFGAIYRLGDAVKVKVLAVNLDDRQIDFELVETSRKLRGQGKTAKKRADEARAKAQGKKE 762
             G  +RLGD V+V+V+ V+LD+R+IDF +   S K        KKR +E  A A   K 
Sbjct: 718 RTGRSFRLGDTVEVQVMRVDLDERKIDFGM---SDKPAEAPTGRKKRGNETAAPATKGKG 774

Query: 763 AATKGA---CGKSPTKSELKPQVEATRRPDSEGRSKPKKTKAPKKRKDQ 808
           A  K A     K+  +S +K +     RP S+  +K  + +  ++ K Q
Sbjct: 775 APAKNAEPEPAKAGRRSSVKDKAPEAYRP-SDAAAKNAELRKSRELKQQ 822