Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 877 a.a., RNAse R from Pseudomonas syringae pv. syringae B728a

 Score =  790 bits (2039), Expect = 0.0
 Identities = 427/859 (49%), Positives = 565/859 (65%), Gaps = 49/859 (5%)

Query: 1   MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR 60
           M+D   LDP A REA+ Y+NPIPSRE IL+ L +   P +R  L E   L  E+Q+E LR
Sbjct: 1   MADWQSLDPEAAREAEKYENPIPSRELILQHLAERGSPASREQLVEEFGLTTEDQFEALR 60

Query: 61  RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH 120
           RRLRAMERD QL++TRR  YA  +KL+++ G + GH+DG G++ P+   +   D+ +   
Sbjct: 61  RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSD---DLFMSPA 117

Query: 121 QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH 180
           QMR +  GD  L + SG D+RGR+EG +V ++   +  IVGR+F E G  +VVPD+ +I 
Sbjct: 118 QMRLVFDGDRALARVSGLDRRGRREGVIVEVISRAHESIVGRYFEESGIGFVVPDNPKIQ 177

Query: 181 HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI 240
            ++L+      GA++G  V ++IT   T      G V+EV+G  MAPGME  +A+RT+ I
Sbjct: 178 QEVLVTPGRNNGAKIGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDI 237

Query: 241 PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKG--- 297
           PH WP  V ++ A L  EV E+ K+ RVDLR LP VTIDGEDARDFDDAVYCEAK G   
Sbjct: 238 PHVWPEAVLKEAAKLKPEVEEKDKEHRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLR 297

Query: 298 ---GGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQ 354
              GGW+L+VAIADVS YV+  +ALD E+  RGNSVYFP +VVPMLPE LSNGLCSLNP 
Sbjct: 298 LFSGGWKLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPH 357

Query: 355 VDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGD-----EELRERYKA 409
           VDRL MVCEMT+S+TG+++ Y  YE +++SHARLTY KV  ILE       + LR  Y  
Sbjct: 358 VDRLAMVCEMTISKTGEMTDYVFYEGIIHSHARLTYNKVSTILEQPKTAEAKSLRGEYGD 417

Query: 410 LVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEEC 469
           +VPHL++L+ MY+VL  AR  RGAI+FET ET+ IF ++RKI  I P  RNDAHKLIEEC
Sbjct: 418 VVPHLKQLYAMYKVLLGARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEEC 477

Query: 470 MILANIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLE-PSPTDYAN 528
           M+ AN+A+A  ++K +  ALYRVH+ P  ERL   R FLGELGL L  G E P+P DY  
Sbjct: 478 MLAANVATAQFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLTLHKGKEGPTPKDYQA 537

Query: 529 LMKQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRA 588
           L++ + +RPD  LIQT++LRS+ QAVY++DN GHFGL  + Y HFTSPIRRYPDLL HRA
Sbjct: 538 LLETVRDRPDYHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRA 597

Query: 589 IKYLIAKQEG----RNQDRWTPTGGYHYSFDD--MDFYGEQCSMTERRADDATREVSDWL 642
           I+ +I  ++     R     T      Y +DD  +D  GEQCSM+ERRAD+ATR+V +WL
Sbjct: 598 IRSVIRSKQDTPHVRRAGAATIPKARIYPYDDALLDQLGEQCSMSERRADEATRDVVNWL 657

Query: 643 KCEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGE 702
           KCEYM+D VGE   GV+  VT FG FV LT+++++GLVH++ L  DYYH+DP+  RL GE
Sbjct: 658 KCEYMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPLHHRLAGE 717

Query: 703 SFGAIYRLGDAVKVKVLAVNLDDRQIDFELVE-------TSRKLRGQ-----GKTAKKRA 750
             G  +RLGD V+V+V+ V+LD+R+IDFE+ E       T+RK RG        T     
Sbjct: 718 RTGRNFRLGDTVEVRVMRVDLDERKIDFEISEAAAAAKPTARKRRGNDTAAPAATTTAEK 777

Query: 751 DEARAKAQGKKEAATKGACGKSPTKSELKPQVEATRR---------PDSEGRSKPKKTK- 800
           D+A AK+ G++ A+TK +  ++   S+   +    R+          D++G SK    K 
Sbjct: 778 DKAPAKS-GRRSASTKESSPEAYRPSDAAAKNAEVRKSRELKKALLADAKGGSKASSGKS 836

Query: 801 -----APKKRKDQARKKSG 814
                AP   K  ++ + G
Sbjct: 837 DRSGSAPSSGKPASKHRKG 855