Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 745 a.a., Cold shock protein from Synechococcus elongatus PCC 7942

 Score =  204 bits (518), Expect = 2e-56
 Identities = 186/716 (25%), Positives = 314/716 (43%), Gaps = 45/716 (6%)

Query: 44  LFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWV 103
           L + L  E E++   L+  L A+ER G L   R + Y   E+ E V+  +     G  + 
Sbjct: 23  LEKKLGCEDEDKSRKLQIILDALERLGLLTKDRGK-YRRNEENEWVEARLRCSSKGFCFA 81

Query: 104 RPEGSLNKEGDILLPHHQMRTLIHGDFVLVQPSGTDKRGRK-EGRLVRILEERNGQIVGR 162
             +       DI +  HQ+    +GD VLV       R R  EG +  ILE  N  ++ R
Sbjct: 82  IQDAE--DAEDIYIREHQLNHAWNGDRVLVNVLREGSRRRSPEGEVKLILERANSSVLAR 139

Query: 163 FFFEY---GYSYVVPDDSRIHHDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVE 219
              +    G+  V  DD  +    L  N L   A   ++  + +          +GKV +
Sbjct: 140 ITEKAEGEGFRAVPLDDRLLCELDLESNGLDLAANRDHLASVAVQRYPLAQLPPVGKVTQ 199

Query: 220 VLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTID 279
           +LG +        +    H +P +W       +  L +     A QGR+DLR++  V I 
Sbjct: 200 ILGSDPESASPVDLIRCKHNLPADWSEAAIAALTDLAQTADANAIQGRLDLRSVFTVAIA 259

Query: 280 GEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPM 339
            +D+R  D A+  +  + GGW++ V   +V+ Y+   + LD EA   G  +      +P 
Sbjct: 260 ADDSRPLDVALSLQPGESGGWQVMVHTVEVAPYLPLQSDLDLEAQRHGIDLRLGETALPF 319

Query: 340 LPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEG 399
           LP VL+ G+       DR  +   + V  TG +  Y+   +++     L+  +  ++L  
Sbjct: 320 LPPVLTQGVGRFAVGEDRRAVSLLIRVDATGAVQDYELQPSLVQLDQVLSPAEATDLLAD 379

Query: 400 DEELRERYKALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESI--EPV 457
            +   E  KA    L+EL  +  + ++ R ERG   FE   T  I N +  +  I   P 
Sbjct: 380 SKAKGEGIKA----LKELQTIADLWRTQRRERGG--FELTVTPAIGNDEGALGVISRSPA 433

Query: 458 VRNDAHKLIEECMILANIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSG 517
           +       ++E +I AN      ++  +   LY     P    +   +     LGL +  
Sbjct: 434 IAG----AVQEILIQANRLVTEHLQALELPVLYVGQRSPDLGSIQDAQRLAAGLGLAIE- 488

Query: 518 GLEPSPTDYANL-MKQIGERPD----KELIQTMLLRSMKQAVYNADNAGHFGLALKRYAH 572
            ++ + T+   L ++Q+ +         L+  +LL++ K + Y+     HF L L+ Y H
Sbjct: 489 -VDENETELNRLALQQLSDATQTSELASLLDHLLLQTFKPSFYSTLAVPHFSLGLETYGH 547

Query: 573 FTSPIRRYPDLLLHRAIKYLIAK---------QEGRNQDRWTPTGGYHYSF--------- 614
           F +P +RY DL L R I  L  +         +EG N    +  G  ++S          
Sbjct: 548 FVAPSQRYADLWLQRVILALFQQGRDRRSSRSKEGVNIRHSSSHGQINWSVLPPEVQTEL 607

Query: 615 -DDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGFFVRLTE 673
             D+    +Q S  E+RA +A+ +     K    +  +G+   GV+  V S+GFFV++  
Sbjct: 608 ETDLKLLAQQLSEAEKRATEASADYQGLQKAAAAKACIGQTFAGVIRGVQSYGFFVQIEA 667

Query: 674 LHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDRQID 729
           L ++GLVH+S+L +D+Y Y    QRL+G      + LGD V+V++  V+   +QID
Sbjct: 668 LQVEGLVHVSSLKDDWYEYRSRQQRLIGRKNRRQFGLGDRVEVEIRNVDYYRQQID 723